RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA715462" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA715462 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12185612 12185612 PRJNA715462_P_NODE_58710_length_247_cov_0.885057_g57914_i0 PRJNA715462 58710 247 0.885057 2.18609079 Paludibaculum fermentans 1473598 Bacteria Bacteria 54.7 0.006   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g57914 i0 96.875 0.388663967611336 32 1 13 0 1 32 8861588 8861619 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 96 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
13946175 13946175 PRJNA715462_P_NODE_68491_length_241_cov_0.916667_g67695_i0 PRJNA715462 68491 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 67.6 7.75e-7   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g67695 i0 91.667 1.14522821576763 48 4 20 0 180 227 2589400 2589353 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 276 67.6 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;