RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA715461" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA715461 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1981148 1981148 PRJNA715461_S_NODE_822_length_278_cov_8.121951_g748_i0 PRJNA715461 822 278 8.121951 22.57902378 Neochlamydia hartmannellae 112235 Bacteria Bacteria 399 7.929999999999999e-107   NTclustered gi|219857449|ref|NR_025037.1| 112235 g748 i0 98.667 81.3489208633093 225 3 81 0 51 275 659 435 Neochlamydia hartmannellae strain A1Hsp 16S ribosomal RNA, partial sequence blastn 22615 399 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
4533484 4533484 PRJNA715461_S_NODE_664_length_322_cov_2.987952_g590_i0 PRJNA715461 664 322 2.987952 9.62120544 Neochlamydia hartmannellae 112235 Bacteria Bacteria 584 2.41e-162   NTclustered gi|194594624|gb|EU662269.1| 112235 g590 i0 99.381 64.4937888198758 323 1 100 1 1 322 1880 1558 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 20767 584 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
14734120 14734120 PRJNA715461_S_NODE_892_length_266_cov_1.715026_g818_i0 PRJNA715461 892 266 1.715026 4.56196916 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 353 5.95e-93   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g818 i0 100 48.6390977443609 191 0 72 0 39 229 1333205 1333395 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 12938 353 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
21107575 21107575 PRJNA715461_S_NODE_517_length_377_cov_7.338816_g443_i0 PRJNA715461 517 377 7.338816 27.66733632 Neochlamydia hartmannellae 112235 Bacteria Bacteria 571 2.2299999999999996e-158   NTclustered gi|194594624|gb|EU662269.1| 112235 g443 i0 100 143.660477453581 309 0 82 0 66 374 689 381 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 54160 571 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;