RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA713989" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA713989 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2466534 2466534 PRJNA713989_S_NODE_11982_length_167_cov_0.864407_g11922_i0 PRJNA713989 11982 167 0.864407 1.44355969 Triticum 4564 Plants Plants 267 4.599999999999999e-67   NTclustered gi|383100758|emb|HE774676.1| 4565 g11922 i0 96.341 137.317365269461 164 3 100 3 5 167 1077162 1077001 Triticum aestivum chromosome arm 3DS-specific BAC library, contig ctg447 blastn 22932 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
7082178 7082178 PRJNA713989_S_NODE_4346_length_250_cov_0.845771_g4286_i0 PRJNA713989 4346 250 0.845771 2.1144275 Hevea brasiliensis 3981 Plants Plants 446 8.89e-121   NTclustered gi|2537639520|ref|XR_009146669.1| 3981 g4286 i0 98.8 100 250 3 100 0 1 250 2124 1875 PREDICTED: Hevea brasiliensis 28S ribosomal RNA (LOC131176763), rRNA blastn 25000 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Hevea Hevea brasiliensis
8356718 8356718 PRJNA713989_S_NODE_12327_length_166_cov_0.871795_g12267_i0 PRJNA713989 12327 166 0.871795 1.4471797 Triticum aestivum 4565 Plants Plants 239 9.94e-59   NTclustered gi|2123750415|ref|XM_044496653.1| 4565 g12267 i0 92.727 89.3072289156626 165 12 99 0 2 166 1521 1357 PREDICTED: Triticum aestivum uncharacterized LOC123073566 (LOC123073566), mRNA blastn 14825 239 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
8844239 8844239 PRJNA713989_S_NODE_5007_length_235_cov_1.526882_g4947_i0 PRJNA713989 5007 235 1.526882 3.5881727 Eukaryota 2759 Plants Plants 429 8.33e-116   NTclustered gi|984915387|gb|KT459188.1| 3993 g4947 i0 99.574 99.9957446808511 235 1 100 0 1 235 904 670 Euphorbia esula voucher Steele_1335 18S ribosomal RNA gene, partial sequence blastn 23499 429 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Euphorbia Euphorbia esula
13945115 13945115 PRJNA713989_S_NODE_11191_length_171_cov_1.213115_g11131_i0 PRJNA713989 11191 171 1.213115 2.07442665 Eukaryota 2759 Plants Plants 311 2.14e-80   NTclustered gi|2748512339|gb|CP158662.1| 3483 g11131 i0 99.415 108.485380116959 171 1 100 0 1 171 19145940 19146110 Cannabis sativa cultivar ERBxHO40_23 chromosome X blastn 18551 311 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
21593499 21593499 PRJNA713989_S_NODE_13817_length_162_cov_0.902655_g13757_i0 PRJNA713989 13817 162 0.902655 1.4623011 Picea 3328 Plants Plants 163 5.97e-36   NTclustered gi|270148009|gb|BT114961.1| 3330 g13757 i0 92.857 2.07407407407407 112 8 69 0 51 162 908 797 Picea glauca clone GQ03606_C08 mRNA sequence blastn 336 163 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
23656435 23656435 PRJNA713989_S_NODE_13419_length_163_cov_0.894737_g13359_i0 PRJNA713989 13419 163 0.894737 1.45842131 Durio zibethinus 66656 Plants Plants 134 4.72e-27   NTclustered gi|1269897368|ref|XM_022903940.1| 66656 g13359 i0 82.099 1.98773006134969 162 24 99 3 1 161 983 1140 PREDICTED: Durio zibethinus uncharacterized LOC111306040 (LOC111306040), mRNA blastn 324 134 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Durio Durio zibethinus
23656675 23656675 PRJNA713989_S_NODE_9559_length_183_cov_1.126866_g9499_i0 PRJNA713989 9559 183 1.126866 2.06216478 Boechera divaricarpa 115915 Plants Plants 183 5.3e-42   NTclustered gi|822599874|emb|HF948530.1| 115915 g9499 i0 84.783 25.8852459016393 184 27 100 1 1 183 801 618 Boechera divaricarpa GSS, clone B25-01-R_D02 blastn 4737 183 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Boechera Boechera divaricarpa
24930038 24930038 PRJNA713989_S_NODE_4100_length_255_cov_2.402913_g4040_i0 PRJNA713989 4100 255 2.402913 6.12742815 Calluna vulgaris 13385 Plants Plants 56.5 0.002   NTclustered gi|2917566876|emb|OZ228610.1| 13385 g4040 i0 97.059 0.792156862745098 34 0 13 1 108 140 49713368 49713335 Calluna vulgaris genome assembly, chromosome: 7 blastn 202 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;