RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA713989" and tax_phylum = "Deinococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA713989 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16494149 16494149 PRJNA713989_S_NODE_11433_length_169_cov_1.700000_g11373_i0 PRJNA713989 11433 169 1.7 2.873 Bacteria 2 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g11373 i0 100 59.9644970414201 169 0 100 0 1 169 426 258 Thermus aquaticus DNA polymerase (PolI) gene blastn 10134 313 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
17281639 17281639 PRJNA713989_S_NODE_6574_length_211_cov_1.216049_g6514_i0 PRJNA713989 6574 211 1.216049 2.56586339 Thermus aquaticus 271 Bacteria Bacteria 368 1.6200000000000002e-97   NTclustered gi|939575972|gb|CP010822.1| 498848 g6514 i0 98.104 1.7914691943128 211 4 100 0 1 211 621721 621931 Thermus aquaticus Y51MC23, complete genome blastn 378 368 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
24929900 24929900 PRJNA713989_S_NODE_12000_length_167_cov_0.864407_g11940_i0 PRJNA713989 12000 167 0.864407 1.44355969 Thermus aquaticus 271 Bacteria Bacteria 309 7.53e-80   NTclustered gi|574957346|gb|KF926652.1| 271 g11940 i0 100 6.7065868263473 167 0 100 0 1 167 703 537 Thermus aquaticus strain YT-1 RM.TaqII (taqIIRM) gene, complete cds blastn 1120 309 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;