RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA704949" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
689122 689122 PRJNA704949_P_NODE_1390761_length_211_cov_1.444444_g1375423_i0 PRJNA704949 1390761 211 1.444444 3.04777684 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 390 3.459999999999999e-104   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1375423 i0 100 10.1800947867299 211 0 100 0 1 211 36971 37181 Hartmannella vermiformis mitochondrion, complete genome blastn 2148 390 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1185452 1185452 PRJNA704949_P_NODE_1057641_length_251_cov_2.282178_g1042305_i0 PRJNA704949 1057641 251 2.282178 5.72826678 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 7.9e-27   NTclustered gi|300078496|gb|GU001158.1| 5778 g1042305 i0 89.623 36.5139442231076 106 10 42 1 21 126 883 987 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9165 135 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1967615 1967615 PRJNA704949_P_NODE_1692142_length_185_cov_2.382353_g1676803_i0 PRJNA704949 1692142 185 2.382353 4.40735305 Echinamoeba silvestris 1215984 Tubulinea other_Eukaryota 307 3.05e-79   NTclustered gi|399764170|gb|JQ271681.1| 1215984 g1676803 i0 98.286 11.3783783783784 175 3 95 0 11 185 539 365 Echinamoeba silvestris strain UKNCC:CCAP1519/1 18S ribosomal RNA gene, partial sequence blastn 2105 307 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba silvestris
1967782 1967782 PRJNA704949_P_NODE_1715362_length_184_cov_1.155556_g1700023_i0 PRJNA704949 1715362 184 1.155556 2.12622304 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 335 1.3899999999999996e-87   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1700023 i0 99.457 1 184 1 100 0 1 184 45264 45447 Hartmannella vermiformis mitochondrion, complete genome blastn 184 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2466004 2466004 PRJNA704949_P_NODE_868982_length_283_cov_3.474359_g853648_i0 PRJNA704949 868982 283 3.474359 9.83243597 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 490 4.67e-134   NTclustered gi|300078496|gb|GU001158.1| 5778 g853648 i0 99.262 23.5441696113074 271 2 96 0 13 283 946 1216 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6663 490 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4521834 4521834 PRJNA704949_P_NODE_1948484_length_168_cov_2.554622_g1933145_i0 PRJNA704949 1948484 168 2.554622 4.29176496 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 294 2.12e-75   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1933145 i0 98.214 1 168 3 100 0 1 168 36664 36497 Hartmannella vermiformis mitochondrion, complete genome blastn 168 294 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5794077 5794077 PRJNA704949_P_NODE_1570825_length_195_cov_1.123288_g1555486_i0 PRJNA704949 1570825 195 1.123288 2.1904116 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 355 1.15e-93   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1555486 i0 99.487 43.2871794871795 195 1 100 0 1 195 29274 29080 Hartmannella vermiformis mitochondrion, complete genome blastn 8441 355 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5798454 5798454 PRJNA704949_P_NODE_2111985_length_164_cov_0.904348_g2096646_i0 PRJNA704949 2111985 164 0.904348 1.48313072 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 272 9.65e-69   NTclustered gi|292559443|ref|NC_013986.1| 5778 g2096646 i0 100 87.390243902439 147 0 90 0 18 164 37326 37180 Hartmannella vermiformis mitochondrion, complete genome blastn 14332 272 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5801005 5801005 PRJNA704949_P_NODE_401445_length_429_cov_1.778947_g386333_i0 PRJNA704949 401445 429 1.778947 7.63168263 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 782 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g386333 i0 99.534 7.78554778554779 429 2 100 0 1 429 46966 46538 Hartmannella vermiformis mitochondrion, complete genome blastn 3340 782 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5801831 5801831 PRJNA704949_P_NODE_490925_length_389_cov_1.376471_g475680_i0 PRJNA704949 490925 389 1.376471 5.35447219 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 682 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g475680 i0 100 23.6401028277635 369 0 95 0 1 369 1590 1222 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9196 682 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5806094 5806094 PRJNA704949_P_NODE_985605_length_262_cov_4.666667_g970270_i0 PRJNA704949 985605 262 4.666667 12.22666754 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 442 1.2099999999999994e-119   NTclustered gi|292559443|ref|NC_013986.1| 5778 g970270 i0 99.587 0.923664122137405 242 1 92 0 21 262 16975 16734 Hartmannella vermiformis mitochondrion, complete genome blastn 242 442 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8349607 8349607 PRJNA704949_P_NODE_299327_length_491_cov_2.714932_g284528_i0 PRJNA704949 299327 491 2.714932 13.33031612 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 854 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g284528 i0 99.158 1.89002036659878 475 3 97 1 18 491 6277 5803 Hartmannella vermiformis mitochondrion, complete genome blastn 928 854 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8350283 8350283 PRJNA704949_P_NODE_365987_length_448_cov_2.225564_g350955_i0 PRJNA704949 365987 448 2.225564 9.97052672 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 822 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g350955 i0 99.777 1.89285714285714 448 1 100 0 1 448 38934 38487 Hartmannella vermiformis mitochondrion, complete genome blastn 848 822 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10894974 10894974 PRJNA704949_P_NODE_1612569_length_192_cov_1.055944_g1597230_i0 PRJNA704949 1612569 192 1.055944 2.02741248 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 355 1.13e-93   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1597230 i0 100 5.58333333333333 192 0 100 0 1 192 16049 16240 Hartmannella vermiformis mitochondrion, complete genome blastn 1072 355 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10897406 10897406 PRJNA704949_P_NODE_1918029_length_169_cov_1.816667_g1902690_i0 PRJNA704949 1918029 169 1.816667 3.07016723 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 278 2.14e-70   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1902690 i0 100 1.5207100591716 150 0 89 0 1 150 29540 29391 Hartmannella vermiformis mitochondrion, complete genome blastn 257 278 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12171808 12171808 PRJNA704949_P_NODE_1810430_length_177_cov_1.218750_g1795091_i0 PRJNA704949 1810430 177 1.21875 2.1571875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 327 2.2199999999999996e-85   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1795091 i0 100 1 177 0 100 0 1 177 36956 36780 Hartmannella vermiformis mitochondrion, complete genome blastn 177 327 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12179553 12179553 PRJNA704949_P_NODE_715210_length_318_cov_1.546468_g699881_i0 PRJNA704949 715210 318 1.546468 4.91776824 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 580 3.0699999999999998e-161   NTclustered gi|292559443|ref|NC_013986.1| 5778 g699881 i0 99.686 1 318 0 100 1 1 318 28834 28518 Hartmannella vermiformis mitochondrion, complete genome blastn 318 580 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17271849 17271849 PRJNA704949_P_NODE_1992634_length_167_cov_1.322034_g1977295_i0 PRJNA704949 1992634 167 1.322034 2.20779678 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 276 7.64e-70   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1977295 i0 100 0.892215568862275 149 0 89 0 1 149 3421 3273 Hartmannella vermiformis mitochondrion, complete genome blastn 149 276 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17276359 17276359 PRJNA704949_P_NODE_513854_length_380_cov_1.546828_g498582_i0 PRJNA704949 513854 380 1.546828 5.8779464 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 697 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g498582 i0 99.737 30.9236842105263 380 1 100 0 1 380 25627 26006 Hartmannella vermiformis mitochondrion, complete genome blastn 11751 697 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21090611 21090611 PRJNA704949_P_NODE_1270877_length_224_cov_1.188571_g1255540_i0 PRJNA704949 1270877 224 1.188571 2.66239904 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 414 2.1999999999999996e-111   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1255540 i0 100 1 224 0 100 0 1 224 30213 30436 Hartmannella vermiformis mitochondrion, complete genome blastn 224 414 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22369711 22369711 PRJNA704949_P_NODE_1803458_length_177_cov_1.625000_g1788119_i0 PRJNA704949 1803458 177 1.625 2.87625 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.03e-83   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1788119 i0 99.435 1.25988700564972 177 1 100 0 1 177 32019 31843 Hartmannella vermiformis mitochondrion, complete genome blastn 223 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22370306 22370306 PRJNA704949_P_NODE_1876118_length_172_cov_1.691057_g1860779_i0 PRJNA704949 1876118 172 1.691057 2.90861804 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 285 1.31e-72   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1860779 i0 98.16 5.42441860465116 163 3 95 0 10 172 20646 20808 Hartmannella vermiformis mitochondrion, complete genome blastn 933 285 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24917084 24917084 PRJNA704949_P_NODE_1586460_length_193_cov_3.680556_g1571121_i0 PRJNA704949 1586460 193 3.680556 7.10347308 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 279 7.01e-71   NTclustered gi|292559443|ref|NC_013986.1| 5778 g1571121 i0 94.086 11.4041450777202 186 8 95 1 11 193 50674 50859 Hartmannella vermiformis mitochondrion, complete genome blastn 2201 279 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;