RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA704949" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA704949 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2462344 2462344 PRJNA704949_P_NODE_1639182_length_189_cov_2.792857_g1623843_i0 PRJNA704949 1639182 189 2.792857 5.27849973 Brachionidae 10193 Rotifera other_Eukaryota 333 5.169999999999999e-87   NTclustered gi|2177087|gb|U49911.1|BPU49911 10195 g1623843 i0 98.413 99.989417989418 189 3 100 0 1 189 1620 1432 Brachionus plicatilis 18S rRNA gene, complete sequence blastn 18898 333 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
8352432 8352432 PRJNA704949_P_NODE_596287_length_351_cov_3.235099_g580964_i0 PRJNA704949 596287 351 3.235099 11.35519749 Brachionus urceolaris 204736 Rotifera other_Eukaryota 475 1.66e-129   NTclustered gi|72153738|gb|DQ089740.1| 204736 g580964 i0 93.458 90.2165242165242 321 20 91 1 32 351 1434 1754 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 31666 475 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
11394613 11394613 PRJNA704949_P_NODE_980129_length_263_cov_2.710280_g964794_i0 PRJNA704949 980129 263 2.71028 7.1280364 Ploima 84394 Rotifera other_Eukaryota 475 1.2e-129   NTclustered gi|259090060|gb|GQ503608.1| 204738 g964794 i0 99.242 100.380228136882 264 1 100 1 1 263 109 372 Keratella cochlearis 18S ribosomal RNA gene, partial sequence blastn 26400 475 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella cochlearis
16002417 16002417 PRJNA704949_P_NODE_678273_length_327_cov_23.992806_g662945_i0 PRJNA704949 678273 327 23.992806 78.45647562 Brachionus rubens 392764 Rotifera other_Eukaryota 261 4.69e-65   NTclustered gi|632795126|gb|KJ489417.1| 392764 g662945 i0 83.391 8.59021406727829 289 40 88 5 25 311 10896 11178 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 2809 261 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17271759 17271759 PRJNA704949_P_NODE_1980114_length_168_cov_0.873950_g1964775_i0 PRJNA704949 1980114 168 0.87395 1.468236 Brachionus plicatilis 10195 Rotifera other_Eukaryota 122 1.06e-23   NTclustered gi|218117238|emb|AM980948.1| 10195 g1964775 i0 87.037 0.642857142857143 108 14 64 0 42 149 158 51 Brachionus plicatilis partial mRNA for 60S ribosomal protein L13a, (RPL13a gene) blastn 108 122 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
22369429 22369429 PRJNA704949_P_NODE_1768458_length_180_cov_1.190840_g1753119_i0 PRJNA704949 1768458 180 1.19084 2.143512 Cephalodella forficula 360656 Rotifera other_Eukaryota 315 1.76e-81   NTclustered gi|83285081|gb|DQ297693.1| 360656 g1753119 i0 99.422 96.1111111111111 173 1 96 0 8 180 623 795 Cephalodella forficula 18S ribosomal RNA gene, partial sequence blastn 17300 315 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella forficula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;