RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA704949" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9629609 9629609 PRJNA704949_P_NODE_811588_length_295_cov_2.349593_g796256_i0 PRJNA704949 811588 295 2.349593 6.93129935 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 174 5.6e-39   NTclustered gi|470399466|ref|XM_004335372.1| 1257118 g796256 i0 94.017 0.711864406779661 117 4 71 3 7 122 418 532 Acanthamoeba castellanii str. Neff Ser/Thr phosphatase family superfamily protein (ACA1_244070), partial mRNA blastn 210 174 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12168536 12168536 PRJNA704949_P_NODE_1400450_length_210_cov_1.503106_g1385112_i0 PRJNA704949 1400450 210 1.503106 3.1565226 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 270 4.6699999999999986e-68   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g1385112 i0 90 43.4619047619048 210 19 99 2 2 210 5362 5570 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 9127 270 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17272658 17272658 PRJNA704949_P_NODE_2097114_length_164_cov_0.904348_g2081775_i0 PRJNA704949 2097114 164 0.904348 1.48313072 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.014   NTclustered gi|470425758|ref|XM_004337790.1| 1257118 g2081775 i0 100 0.170731707317073 28 0 17 0 15 42 878 905 Acanthamoeba castellanii str. Neff chondroitin AC lyase (ACA1_079200), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19815920 19815920 PRJNA704949_P_NODE_1376956_length_212_cov_2.306748_g1361618_i0 PRJNA704949 1376956 212 2.306748 4.89030576 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.019   NTclustered gi|470494147|ref|XM_004346550.1| 1257118 g1361618 i0 100 0.132075471698113 28 0 13 0 84 111 374 347 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_230300), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23643362 23643362 PRJNA704949_P_NODE_1535879_length_198_cov_1.046980_g1520540_i0 PRJNA704949 1535879 198 1.04698 2.0730204 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 65.8 2.2e-6   NTclustered gi|470467005|ref|XM_004341715.1| 1257118 g1520540 i0 87.719 0.287878787878788 57 5 28 2 14 69 104 49 Acanthamoeba castellanii str. Neff TolAlike protein (ACA1_199540), partial mRNA blastn 57 65.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;