RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA704949" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA704949 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14721350 14721350 PRJNA704949_P_NODE_1803672_length_177_cov_1.625000_g1788333_i0 PRJNA704949 1803672 177 1.625 2.87625 Chlorobaculum tepidum 1097 Bacteria Bacteria 104 4.07e-18   NTclustered gi|21672293|gb|AE006470.1| 194439 g1788333 i0 79.605 32.0621468926554 152 26 85 4 25 175 528078 527931 Chlorobium tepidum TLS, complete genome blastn 5675 104 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
20313052 20313052 PRJNA704949_P_NODE_1506336_length_200_cov_1.735099_g1490998_i0 PRJNA704949 1506336 200 1.735099 3.470198 Bacteria 2 Bacteria Bacteria 97.1 7.91e-16   NTclustered gi|635213055|tpe|LK004451.1| 194439 g1490998 i0 100 32.605 52 0 26 0 149 200 1 52 TPA: Chlorobium tepidum TLS tRNA-Arg-ACG-1-1 gene blastn 6521 97.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
21589802 21589802 PRJNA704949_P_NODE_185797_length_604_cov_3.041441_g171825_i0 PRJNA704949 185797 604 3.041441 18.37030364 FCB group 1783270 Bacteria Bacteria 54.7 0.017   NTclustered gi|194310671|gb|CP001108.1| 290512 g171825 i0 100 0.394039735099338 29 0 5 0 222 250 1584210 1584238 Prosthecochloris aestuarii DSM 271 chromosome, complete genome blastn 238 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;