RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA704949" and tax_phylum = "Candidatus Bipolaricaulota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1978006 1978006 PRJNA704949_P_NODE_92482_length_811_cov_3.311024_g80253_i0 PRJNA704949 92482 811 3.311024 26.85240464 Candidatus Bipolaricaulis anaerobius 2026885 Bacteria Bacteria 54.7 0.023   NTclustered gi|1403730514|emb|LS483254.1| 2026885 g80253 i0 100 0.0357583230579531 29 0 4 0 187 215 1220639 1220667 Candidatus Acetothermia bacterium Ran1 isolate BARAN1 MAG genome assembly, chromosome: BARAN1 blastn 29 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia Candidatus Bipolaricaulales Candidatus Bipolaricaulaceae Candidatus Bipolaricaulis Candidatus Bipolaricaulis anaerobius
13449400 13449400 PRJNA704949_P_NODE_239411_length_542_cov_2.614604_g224940_i0 PRJNA704949 239411 542 2.614604 14.17115368 Candidatus Bipolaricaulis sibiricus 2501609 Bacteria Bacteria 497 5.69e-136   NTclustered gi|1560905428|gb|CP034928.1| 2501609 g224940 i0 83.585 10.3376383763838 530 87 98 0 7 536 1074248 1074777 MAG: Candidatus Bipolaricaulis sibiricus isolate Ch78 chromosome, complete genome blastn 5603 497 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia Candidatus Bipolaricaulales Candidatus Bipolaricaulaceae Candidatus Bipolaricaulis Candidatus Bipolaricaulis sibiricus
14722242 14722242 PRJNA704949_P_NODE_1921012_length_169_cov_1.650000_g1905673_i0 PRJNA704949 1921012 169 1.65 2.7885 Candidatus Bipolaricaulis sibiricus 2501609 Bacteria Bacteria 113 6.3800000000000005e-21   NTclustered gi|1560905428|gb|CP034928.1| 2501609 g1905673 i0 83.74 4.2189349112426 123 17 73 2 3 125 612043 612162 MAG: Candidatus Bipolaricaulis sibiricus isolate Ch78 chromosome, complete genome blastn 713 113 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia Candidatus Bipolaricaulales Candidatus Bipolaricaulaceae Candidatus Bipolaricaulis Candidatus Bipolaricaulis sibiricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;