RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA703759 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2459988 2459988 PRJNA703759_P_NODE_14862_length_351_cov_1.122302_g14386_i0 PRJNA703759 14862 351 1.122302 3.93928002 Verrucomicrobiota 74201 Bacteria Bacteria 121 8.959999999999999e-23   NTclustered gi|226525288|gb|FJ872373.1| 156588 g14386 i0 91.111 10.5754985754986 90 6 25 2 2 90 17047 16959 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 3712 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
3235732 3235732 PRJNA703759_P_NODE_44823_length_246_cov_0.901734_g44347_i0 PRJNA703759 44823 246 0.901734 2.21826564 Opitutus sp. GAS368 1882749 Bacteria Bacteria 159 1.27e-34   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g44347 i0 81.407 30.6869918699187 199 33 80 4 31 227 574406 574210 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 7549 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
3235818 3235818 PRJNA703759_P_NODE_48323_length_244_cov_0.912281_g47847_i0 PRJNA703759 48323 244 0.912281 2.22596564 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 124 4.599999999999999e-24   NTclustered gi|2874253952|emb|OY970277.1| 412056 g47847 i0 96.104 2.92213114754098 77 2 32 1 39 115 485713 485638 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 713 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3736770 3736770 PRJNA703759_P_NODE_51843_length_237_cov_2.292683_g51367_i0 PRJNA703759 51843 237 2.292683 5.43365871 Verrucomicrobium 2735 Bacteria Bacteria 392 1.0999999999999999e-104   NTclustered gi|242246546|emb|FN424008.1| 114704 g51367 i0 97.403 95.5400843881856 231 4 97 2 1 230 282 53 Uncultured Verrucomicrobium sp. partial 16S rRNA gene, clone Paila10-57 blastn 22643 392 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium uncultured Verrucomicrobium sp.
9612479 9612479 PRJNA703759_P_NODE_14528_length_354_cov_1.590747_g14052_i0 PRJNA703759 14528 354 1.590747 5.63124438 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 204 8.74e-48   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g14052 i0 78.797 2.67796610169492 316 58 88 8 44 354 4139013 4139324 Luteolibacter sp. Populi chromosome, complete genome blastn 948 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
10888760 10888760 PRJNA703759_P_NODE_43009_length_247_cov_0.896552_g42533_i0 PRJNA703759 43009 247 0.896552 2.21448344 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 191 4.53e-44   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g42533 i0 82.143 1.91093117408907 224 38 90 2 19 241 5846309 5846531 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 472 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;