RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12163595 12163595 PRJNA703759_P_NODE_28630_length_271_cov_2.348485_g28154_i0 PRJNA703759 28630 271 2.348485 6.36439435 Lepadella patella 231622 Rotifera other_Eukaryota 442 1.2599999999999993e-119   NTclustered gi|166014123|gb|EU252112.1| 497825 g28154 i0 95.699 40.1734317343173 279 4 100 3 1 271 449 171 Lepadella patella oblonga internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 10887 442 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
21087304 21087304 PRJNA703759_P_NODE_51917_length_236_cov_2.208589_g51441_i0 PRJNA703759 51917 236 2.208589 5.21227004 Philodina citrina 468664 Rotifera other_Eukaryota 224 4.2399999999999996e-54   NTclustered gi|407227484|emb|FR856884.1| 468664 g51441 i0 86.058 0.88135593220339 208 29 88 0 2 209 1432 1639 Philodina citrina complete mitochondrial genome blastn 208 224 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
25411503 25411503 PRJNA703759_P_NODE_42500_length_247_cov_1.994253_g42024_i0 PRJNA703759 42500 247 1.994253 4.92580491 Lecane 96445 Rotifera other_Eukaryota 344 3.29e-90   NTclustered gi|61200802|gb|AY829083.1| 96446 g42024 i0 91.667 56.6315789473684 252 15 100 2 1 247 2086 1836 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 13988 344 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;