RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1961031 1961031 PRJNA703759_P_NODE_9842_length_431_cov_1.743017_g9366_i0 PRJNA703759 9842 431 1.743017 7.51240327 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 560 5.59e-155   NTclustered gi|325194231|emb|FR825088.1| 890382 g9366 i0 90.3 1.11832946635731 433 34 100 6 1 431 472 898 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 482 560 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4512091 4512091 PRJNA703759_P_NODE_15784_length_341_cov_3.179104_g15308_i0 PRJNA703759 15784 341 3.179104 10.84074464 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 538 2.0299999999999994e-148   NTclustered gi|325194231|emb|FR825088.1| 890382 g15308 i0 95.308 1.09970674486804 341 13 100 2 1 341 711 1048 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 375 538 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4512801 4512801 PRJNA703759_P_NODE_43984_length_246_cov_1.919075_g43508_i0 PRJNA703759 43984 246 1.919075 4.7209245 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 433 6.79e-117   NTclustered gi|325194231|emb|FR825088.1| 890382 g43508 i0 98.374 2.14227642276423 246 4 100 0 1 246 1468 1223 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 527 433 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13438142 13438142 PRJNA703759_P_NODE_30651_length_264_cov_2.706806_g30175_i0 PRJNA703759 30651 264 2.706806 7.14596784 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 405 1.61e-108   NTclustered gi|325195057|emb|FR825852.1| 890382 g30175 i0 94.34 103.931818181818 265 14 100 1 1 264 176 440 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 27438 405 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;