RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA703759 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4513074 4513074 PRJNA703759_P_NODE_7424_length_510_cov_4.645309_g6948_i0 PRJNA703759 7424 510 4.645309 23.6910759 Meloidogyne incognita 6306 Nematoda Nematoda 420 1.1899999999999995e-112   NTclustered gi|395144|emb|Z24734.1| 6306 g6948 i0 82.51 1.90588235294118 486 77 95 5 26 510 931 453 M.incognita Lemmi5 mRNA, complete CDS blastn 972 420 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
9612421 9612421 PRJNA703759_P_NODE_12008_length_387_cov_1.748408_g11532_i0 PRJNA703759 12008 387 1.748408 6.76633896 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.037   NTclustered gi|690019027|emb|LM526320.1| 174720 g11532 i0 96.774 0.160206718346253 31 1 8 0 286 316 7807 7837 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000667 blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14713756 14713756 PRJNA703759_P_NODE_48592_length_243_cov_1.670588_g48116_i0 PRJNA703759 48592 243 1.670588 4.05952884 Meloidogyne incognita 6306 Nematoda Nematoda 171 5.8e-38   NTclustered gi|2338457|gb|AF013290.1|AF013290 6306 g48116 i0 91.2 85.9835390946502 125 11 51 0 1 125 135 11 Meloidogyne incognita elongation factor (EF-1) mRNA, partial cds blastn 20894 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
14713981 14713981 PRJNA703759_P_NODE_8892_length_456_cov_3.778068_g8416_i0 PRJNA703759 8892 456 3.778068 17.22799008 Meloidogyne incognita 6306 Nematoda Nematoda 435 3.76e-117   NTclustered gi|1184071|gb|U40766.1|MIU40766 6306 g8416 i0 84.187 1.94956140350877 449 70 98 1 1 449 463 16 Meloidogyne incognita cuticle collagen COL-1 (col-1) mRNA, complete cds blastn 889 435 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
15986487 15986487 PRJNA703759_P_NODE_11153_length_404_cov_1.232628_g10677_i0 PRJNA703759 11153 404 1.232628 4.97981712 Meloidogyne graminicola 189291 Nematoda Nematoda 734 0   NTclustered gi|1732099053|emb|LS974432.1| 189291 g10677 i0 99.504 89.0816831683168 403 2 99 0 1 403 4102 4504 Meloidogyne graminicola genomic DNA containing Complete ribosomal unit, Type I region blastn 35989 734 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
17261842 17261842 PRJNA703759_P_NODE_11174_length_403_cov_2.657576_g10698_i0 PRJNA703759 11174 403 2.657576 10.71003128 Meloidogyne incognita 6306 Nematoda Nematoda 263 1.64e-65   NTclustered gi|1589836|gb|U68729.1|MIU68729 6306 g10698 i0 83.942 0.794044665012407 274 44 68 0 130 403 941 668 Meloidogyne incognita cuticle preprocollagen (col-2) mRNA, complete cds blastn 320 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
25411426 25411426 PRJNA703759_P_NODE_28960_length_270_cov_1.583756_g28484_i0 PRJNA703759 28960 270 1.583756 4.2761412 Meloidogyne 189290 Nematoda Nematoda 499 7.349999999999998e-137   NTclustered gi|1732099053|emb|LS974432.1| 189291 g28484 i0 100 59.4666666666667 270 0 100 0 1 270 6166 6435 Meloidogyne graminicola genomic DNA containing Complete ribosomal unit, Type I region blastn 16056 499 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;