RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13938888 13938888 PRJNA703759_P_NODE_41251_length_248_cov_1.337143_g40775_i0 PRJNA703759 41251 248 1.337143 3.31611464 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|2179714268|gb|CP051215.1| 1276218 g40775 i0 100 0.790322580645161 28 0 11 0 203 230 51405 51432 Spiroplasma platyhelix PALS-1 chromosome, complete genome blastn 196 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma platyhelix
20311245 20311245 PRJNA703759_P_NODE_26776_length_278_cov_1.258537_g26300_i0 PRJNA703759 26776 278 1.258537 3.49873286 Mollicutes 31969 Bacteria Bacteria 508 1.26e-139   NTclustered gi|281186773|gb|GU227378.1| 2100 g26300 i0 99.64 99.8705035971223 278 1 100 0 1 278 1170 893 Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence blastn 27764 508 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
22361504 22361504 PRJNA703759_P_NODE_25978_length_281_cov_1.384615_g25502_i0 PRJNA703759 25978 281 1.384615 3.89076815 Metamycoplasma faucium 56142 Bacteria Bacteria 252 2.38e-62   NTclustered gi|2708452869|gb|CP088155.1| 56142 g25502 i0 87.671 0.779359430604982 219 24 77 3 1 216 256788 256570 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 219 252 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;