RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA703759 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5788351 5788351 PRJNA703759_P_NODE_51045_length_242_cov_0.923077_g50569_i0 PRJNA703759 51045 242 0.923077 2.23384634 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 108 4.59e-19   NTclustered gi|47176057|gb|AY617637.1| 94289 g50569 i0 86.598 0.400826446280992 97 13 40 0 28 124 321 225 Sterkiella histriomuscorum clone UGC1O0003_N24_R genomic sequence blastn 97 108 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
17262651 17262651 PRJNA703759_P_NODE_43314_length_247_cov_0.896552_g42838_i0 PRJNA703759 43314 247 0.896552 2.21448344 Euplotes sp. BB-2004 291624 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|51947518|gb|AY608636.1| 291624 g42838 i0 94.286 0.1417004048583 35 1 14 1 214 247 63 29 Euplotes sp. BB-2004 hydrogenosomal NADH dehydrogenase 51 kDa subunit gene, complete cds; nuclear gene for hydrogenosomal product blastn 35 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes sp. BB-2004
24910291 24910291 PRJNA703759_P_NODE_13700_length_363_cov_1.717241_g13224_i0 PRJNA703759 13700 363 1.717241 6.23358483 Pseudokeronopsis erythrina 1230127 SAR_Eukaryotes SAR_Eukaryotes 137 9.24e-28   NTclustered gi|2889127627|gb|PQ685978.1| 1230127 g13224 i0 89.286 0.556473829201102 112 9 30 3 39 148 1432 1322 Pseudokeronopsis erythrina isolate CUI1 mitochondrion, partial genome blastn 202 137 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Pseudokeronopsidae Pseudokeronopsis Pseudokeronopsis erythrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;