RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA703759 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7062799 7062799 PRJNA703759_P_NODE_22966_length_293_cov_1.700000_g22490_i0 PRJNA703759 22966 293 1.7 4.981 uncultured delta proteobacterium 34034 Bacteria Bacteria 211 4.24e-50   NTclustered gi|2874253659|emb|OY969087.1| 34034 g22490 i0 80.272 2.28327645051195 294 47 99 10 2 291 6591067 6591353 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 669 211 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13438147 13438147 PRJNA703759_P_NODE_30891_length_264_cov_1.115183_g30415_i0 PRJNA703759 30891 264 1.115183 2.94408312 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 128 3.9e-25   NTclustered gi|82617822|gb|DQ267495.1| 357894 g30415 i0 89.899 31.3598484848485 99 10 38 0 165 263 4638 4736 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 8279 128 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;