RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA703759 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1961031 1961031 PRJNA703759_P_NODE_9842_length_431_cov_1.743017_g9366_i0 PRJNA703759 9842 431 1.743017 7.51240327 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 560 5.59e-155   NTclustered gi|325194231|emb|FR825088.1| 890382 g9366 i0 90.3 1.11832946635731 433 34 100 6 1 431 472 898 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 482 560 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
3235781 3235781 PRJNA703759_P_NODE_46963_length_244_cov_2.181287_g46487_i0 PRJNA703759 46963 244 2.181287 5.32234028 Babesia rodhaini 5870 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|1606504052|dbj|AB665055.1| 5870 g46487 i0 96.97 0.479508196721311 33 1 14 0 13 45 4271 4239 Babesia rodhaini apicoplast DNA, complete genome, strain: Australian blastn 117 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia rodhaini
4512091 4512091 PRJNA703759_P_NODE_15784_length_341_cov_3.179104_g15308_i0 PRJNA703759 15784 341 3.179104 10.84074464 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 538 2.0299999999999994e-148   NTclustered gi|325194231|emb|FR825088.1| 890382 g15308 i0 95.308 1.09970674486804 341 13 100 2 1 341 711 1048 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 375 538 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4512801 4512801 PRJNA703759_P_NODE_43984_length_246_cov_1.919075_g43508_i0 PRJNA703759 43984 246 1.919075 4.7209245 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 433 6.79e-117   NTclustered gi|325194231|emb|FR825088.1| 890382 g43508 i0 98.374 2.14227642276423 246 4 100 0 1 246 1468 1223 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 527 433 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5788351 5788351 PRJNA703759_P_NODE_51045_length_242_cov_0.923077_g50569_i0 PRJNA703759 51045 242 0.923077 2.23384634 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 108 4.59e-19   NTclustered gi|47176057|gb|AY617637.1| 94289 g50569 i0 86.598 0.400826446280992 97 13 40 0 28 124 321 225 Sterkiella histriomuscorum clone UGC1O0003_N24_R genomic sequence blastn 97 108 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
10888367 10888367 PRJNA703759_P_NODE_26829_length_278_cov_1.136585_g26353_i0 PRJNA703759 26829 278 1.136585 3.1597063 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.5e-4   NTclustered gi|915140275|ref|XM_013481871.1| 5804 g26353 i0 97.059 0.122302158273381 34 1 12 0 26 59 2747 2714 Eimeria maxima hypothetical protein partial mRNA blastn 34 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
13438142 13438142 PRJNA703759_P_NODE_30651_length_264_cov_2.706806_g30175_i0 PRJNA703759 30651 264 2.706806 7.14596784 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 405 1.61e-108   NTclustered gi|325195057|emb|FR825852.1| 890382 g30175 i0 94.34 103.931818181818 265 14 100 1 1 264 176 440 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 27438 405 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13438420 13438420 PRJNA703759_P_NODE_43211_length_247_cov_0.896552_g42735_i0 PRJNA703759 43211 247 0.896552 2.21448344 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.71e-5   NTclustered gi|820688329|tpe|LN714474.1| 572307 g42735 i0 97.222 4.1417004048583 36 1 15 0 8 43 1908964 1908929 TPA_asm: Neospora caninum Liverpool, chromosome chrIa, complete genome blastn 1023 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
14713444 14713444 PRJNA703759_P_NODE_33632_length_255_cov_1.285714_g33156_i0 PRJNA703759 33632 255 1.285714 3.2785707 Babesia duncani 323732 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1474771164|gb|MH107388.1| 323732 g33156 i0 96.97 0.23921568627451 33 0 13 1 38 70 12686 12655 Babesia duncani isolate WA-1 apicoplast, complete genome blastn 61 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani
15986981 15986981 PRJNA703759_P_NODE_30773_length_264_cov_1.497382_g30297_i0 PRJNA703759 30773 264 1.497382 3.95308848 Mallomonas kalinae 1261422 SAR_Eukaryotes SAR_Eukaryotes 379 9.739999999999998e-101   NTclustered gi|859810704|gb|KM817907.1| 1261422 g30297 i0 92.481 100.757575757576 266 18 100 2 1 264 1427 1692 Mallomonas kalinae strain CCMP3213 26S ribosomal RNA gene, partial sequence blastn 26600 379 1 Eukaryota Sar     Synurophyceae Synurales Mallomonadaceae Mallomonas Mallomonas kalinae
17262651 17262651 PRJNA703759_P_NODE_43314_length_247_cov_0.896552_g42838_i0 PRJNA703759 43314 247 0.896552 2.21448344 Euplotes sp. BB-2004 291624 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|51947518|gb|AY608636.1| 291624 g42838 i0 94.286 0.1417004048583 35 1 14 1 214 247 63 29 Euplotes sp. BB-2004 hydrogenosomal NADH dehydrogenase 51 kDa subunit gene, complete cds; nuclear gene for hydrogenosomal product blastn 35 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes sp. BB-2004
24910291 24910291 PRJNA703759_P_NODE_13700_length_363_cov_1.717241_g13224_i0 PRJNA703759 13700 363 1.717241 6.23358483 Pseudokeronopsis erythrina 1230127 SAR_Eukaryotes SAR_Eukaryotes 137 9.24e-28   NTclustered gi|2889127627|gb|PQ685978.1| 1230127 g13224 i0 89.286 0.556473829201102 112 9 30 3 39 148 1432 1322 Pseudokeronopsis erythrina isolate CUI1 mitochondrion, partial genome blastn 202 137 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Pseudokeronopsidae Pseudokeronopsis Pseudokeronopsis erythrina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;