RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA703759" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA703759 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14713757 14713757 PRJNA703759_P_NODE_48632_length_243_cov_1.517647_g48156_i0 PRJNA703759 48632 243 1.517647 3.68788221 Cochliopodium plurinucleolum 1512277 Discosea other_Eukaryota 366 6.89e-97   NTclustered gi|659103930|gb|KJ569732.1| 1512277 g48156 i0 93.827 56.9958847736626 243 15 100 0 1 243 622 864 Cochliopodium plurinucleolum 18S ribosomal RNA gene, partial sequence blastn 13850 366 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium plurinucleolum
22361703 22361703 PRJNA703759_P_NODE_34658_length_253_cov_0.866667_g34182_i0 PRJNA703759 34658 253 0.866667 2.19266751 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 75 4.9e-9   NTclustered gi|470506140|ref|XM_004348660.1| 1257118 g34182 i0 95.652 0.565217391304348 46 2 18 0 207 252 673 628 Acanthamoeba castellanii str. Neff Guanine nucleotidebinding protein G(o), alpha subunit, putative (ACA1_035260), partial mRNA blastn 143 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22862293 22862293 PRJNA703759_P_NODE_21118_length_303_cov_1.513043_g20642_i0 PRJNA703759 21118 303 1.513043 4.58452029 Entamoeba 5758 Evosea other_Eukaryota 86.1 2.78e-12   NTclustered gi|83843290|tpg|BK005670.1| 5759 g20642 i0 94.545 15.8778877887789 55 3 18 0 138 192 62 8 TPA_exp: Entamoeba histolytica tRNA-encoding array unit TX blastn 4811 86.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
25411505 25411505 PRJNA703759_P_NODE_42900_length_247_cov_0.896552_g42424_i0 PRJNA703759 42900 247 0.896552 2.21448344 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|66823900|ref|XM_640213.1| 352472 g42424 i0 96.875 12.3400809716599 32 0 13 1 40 71 1566 1536 Dictyostelium discoideum AX4 aspartyl-tRNA synthetase (aspS2) mRNA, complete cds blastn 3048 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;