RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA702290" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA702290 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3234772 3234772 PRJNA702290_P_NODE_363_length_235_cov_8.086735_g355_i0 PRJNA702290 363 235 8.086735 19.00382725 Blidingia sp. DT1 2022611 Plants Plants 200 7.11e-47   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g355 i0 94.03 49.9574468085106 134 5 57 3 7 139 3072 2941 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 11740 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
12664133 12664133 PRJNA702290_P_NODE_1150_length_191_cov_4.394737_g1142_i0 PRJNA702290 1150 191 4.394737 8.39394767 Eukaryota 2759 Plants Plants 143 9.479999999999999e-30   NTclustered gi|63029886|gb|DQ009743.1| 3156 g1142 i0 100 66.1675392670157 77 0 40 0 4 80 1587 1511 Asteromonas gracilis strain CCMP 140 18S ribosomal RNA gene, partial sequence blastn 12638 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Asteromonadaceae Asteromonas Asteromonas gracilis
20311001 20311001 PRJNA702290_P_NODE_1116_length_191_cov_5.125000_g1108_i0 PRJNA702290 1116 191 5.125 9.78875 Trebouxia 13786 Plants Plants 117 5.74e-22   NTclustered gi|49781197|gb|AY648107.1| 283661 g1108 i0 94.667 13.5287958115183 75 4 39 0 6 80 1671 1597 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 2584 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
24910094 24910094 PRJNA702290_P_NODE_700_length_191_cov_15.763158_g692_i0 PRJNA702290 700 191 15.763158 30.10763178 Tetraselmis marina 41888 Plants Plants 137 4.41e-28   NTclustered gi|2289397876|ref|NC_065695.1| 41888 g692 i0 97.5 44.2146596858639 80 2 42 0 112 191 77744 77823 Tetraselmis marina chloroplast, complete genome blastn 8445 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;