RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA702290" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA702290 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3234771 3234771 PRJNA702290_P_NODE_2143_length_150_cov_12.774775_g2135_i0 PRJNA702290 2143 150 12.774775 19.1621625 Phacus pseudonordstedtii 158831 Euglenozoa other_Eukaryota 254 3.1200000000000003e-63   NTclustered gi|371456074|gb|DQ140112.2| 158831 g2135 i0 97.959 69.54 147 2 98 1 2 148 3286 3431 Phacus pseudonordstedtii large subunit ribosomal RNA gene, partial sequence blastn 10431 254 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Phacus Phacus pseudonordstedtii
5787294 5787294 PRJNA702290_P_NODE_265_length_287_cov_17.479839_g257_i0 PRJNA702290 265 287 17.479839 50.16713793 Euglena viridis 3040 Euglenozoa other_Eukaryota 464 2.8799999999999993e-126   NTclustered gi|20386044|gb|AF445460.1| 3040 g257 i0 96.774 32.993031358885 279 7 97 2 4 280 1138 860 Euglena viridis 18S small subunit ribosomal RNA gene, partial sequence blastn 9469 464 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena viridis
16487592 16487592 PRJNA702290_P_NODE_1013_length_191_cov_8.111842_g1005_i0 PRJNA702290 1013 191 8.111842 15.49361822 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 141 3.41e-29   NTclustered gi|2414483|emb|Y00055.1| 5656 g1005 i0 98.734 83.2931937172775 79 1 81 0 2 80 5769 5847 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 15909 141 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;