RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA702290" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA702290 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1959791 1959791 PRJNA702290_P_NODE_1842_length_156_cov_15.282051_g1834_i0 PRJNA702290 1842 156 15.282051 23.83999956 Diderma spumarioides 385446 Evosea other_Eukaryota 100 4.52e-17   NTclustered gi|1441557074|gb|MH714792.1| 385446 g1834 i0 95.312 42.0512820512821 64 2 40 1 79 141 209 146 Diderma spumarioides isolate LE266495 small subunit ribosomal RNA gene, partial sequence blastn 6560 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma spumarioides
7562537 7562537 PRJNA702290_P_NODE_1166_length_191_cov_4.032895_g1158_i0 PRJNA702290 1166 191 4.032895 7.70282945 Tubulinea 555369 Tubulinea other_Eukaryota 121 4.439999999999999e-23   NTclustered gi|300078496|gb|GU001158.1| 5778 g1158 i0 93.75 37.3979057591623 80 5 42 0 112 191 1856 1935 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7143 121 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9612264 9612264 PRJNA702290_P_NODE_2068_length_152_cov_9.203540_g2060_i0 PRJNA702290 2068 152 9.20354 13.9893808 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 248 1.48e-61   NTclustered gi|345452560|gb|JF694298.1| 1078836 g2060 i0 97.902 91.2039473684211 143 3 94 0 7 149 169 27 Cryptodifflugia operculata clone 2 actin gene, partial cds blastn 13863 248 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
21586896 21586896 PRJNA702290_P_NODE_2077_length_152_cov_4.053097_g2069_i0 PRJNA702290 2077 152 4.053097 6.16070744 root 1 Root_unresolved Root_unresolved 84.2 4.41e-12   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g2069 i0 83.696 62.375 92 11 61 1 54 145 2516 2603 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9481 84.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;