RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
683302 683302 PRJNA700095_P_NODE_54561_length_248_cov_1.748571_g53297_i0 PRJNA700095 54561 248 1.748571 4.33645608 Desulfuromonas soudanensis 1603606 Bacteria Bacteria 176 1.28e-39   NTclustered gi|924528553|gb|CP010802.1| 1603606 g53297 i0 79.918 52.7177419354839 244 46 98 3 5 246 2963917 2963675 Desulfuromonas soudanensis strain WTL chromosome, complete genome blastn 13074 176 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas soudanensis
14712140 14712140 PRJNA700095_P_NODE_25472_length_340_cov_2.423221_g24208_i0 PRJNA700095 25472 340 2.423221 8.2389514 Pseudodesulfovibrio profundus 57320 Bacteria Bacteria 52.8 0.032   NTclustered gi|1248817418|emb|LT907975.1| 57320 g24208 i0 96.875 0.0941176470588235 32 0 9 1 115 146 14005 13975 Desulfovibrio profundus strain 500-1 genome assembly, chromosome: DPRO blastn 32 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio profundus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;