RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8336498 8336498 PRJNA700095_P_NODE_59727_length_245_cov_0.889535_g58463_i0 PRJNA700095 59727 245 0.889535 2.17936075 Borrelia puertoricensis 2756107 Bacteria Bacteria 54.7 0.006   NTclustered gi|2225483732|gb|CP075391.1| 2756107 g58463 i0 100 0.118367346938776 29 0 12 0 205 233 11002 11030 Borrelia puertoricensis strain SUM plasmid lp110, complete sequence blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia puertoricensis
9611675 9611675 PRJNA700095_P_NODE_36888_length_284_cov_1.274882_g35624_i0 PRJNA700095 36888 284 1.274882 3.62066488 Treponema putidum 221027 Bacteria Bacteria 254 6.7e-63   NTclustered gi|2277015157|gb|CP038803.1| 221027 g35624 i0 83.696 2.91197183098592 276 37 96 6 13 284 2349029 2349300 Treponema putidum strain OMZ 846 chromosome, complete genome blastn 827 254 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema putidum
10887247 10887247 PRJNA700095_P_NODE_36629_length_284_cov_4.943128_g35365_i0 PRJNA700095 36629 284 4.943128 14.03848352 Leptospira sp. GIMC2001 1513297 Bacteria Bacteria 58.4 5.64e-4   NTclustered gi|2440388381|gb|CP115468.1| 1513297 g35365 i0 100 0.408450704225352 31 0 11 0 1 31 2313078 2313108 Leptospira sp. GIMC2001 chromosome 1, complete sequence blastn 116 58.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. GIMC2001

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;