RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA700095 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
683131 683131 PRJNA700095_P_NODE_1341_length_1548_cov_38.159322_g49_i4 PRJNA700095 1341 1548 38.159322 590.70630456 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.044   NTclustered gi|170285697|emb|CU672270.3| 123356 g49 i4 100 0.018733850129199 29 0 2 0 724 752 1761 1789 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
683156 683156 PRJNA700095_P_NODE_2081_length_1308_cov_41.697166_g49_i6 PRJNA700095 2081 1308 41.697166 545.39893128 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.037   NTclustered gi|170285697|emb|CU672270.3| 123356 g49 i6 100 0.02217125382263 29 0 2 0 724 752 1761 1789 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
4511114 4511114 PRJNA700095_P_NODE_10744_length_590_cov_2.253385_g9504_i0 PRJNA700095 10744 590 2.253385 13.2949715 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 132 7.28e-26   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g9504 i0 75 40.0610169491525 320 63 53 12 267 578 1227 917 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 23636 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
14712097 14712097 PRJNA700095_P_NODE_1532_length_1469_cov_39.614613_g49_i5 PRJNA700095 1532 1469 39.614613 581.93866497 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.042   NTclustered gi|170285697|emb|CU672270.3| 123356 g49 i5 100 0.0197413206262764 29 0 2 0 724 752 1761 1789 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
15212856 15212856 PRJNA700095_P_NODE_7852_length_707_cov_31.706625_g6695_i0 PRJNA700095 7852 707 31.706625 224.16583875 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 488 4.539999999999999e-133   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g6695 i0 86.057 62.8401697312588 459 59 65 4 155 611 483 28 Pythium splendens calmodulin mRNA, complete cds blastn 44428 492 0.991869918699187 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
19810182 19810182 PRJNA700095_P_NODE_49236_length_255_cov_1.329670_g47972_i0 PRJNA700095 49236 255 1.32967 3.3906585 Plasmopara sp. HV-2014a 1458840 SAR_Eukaryotes SAR_Eukaryotes 409 1.19e-109   NTclustered gi|629748269|gb|KF041005.1| 1458840 g47972 i0 95.669 99.7019607843137 254 11 99 0 1 254 505 758 Plasmopara sp. HV-2014a large subunit ribosomal RNA gene, partial sequence blastn 25424 409 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara sp. HV-2014a
21085483 21085483 PRJNA700095_P_NODE_10697_length_591_cov_99.156371_g9457_i0 PRJNA700095 10697 591 99.156371 586.01415261 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.85e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g9457 i0 80.533 57.238578680203 375 65 62 4 191 558 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21085754 21085754 PRJNA700095_P_NODE_66277_length_240_cov_2.161677_g65013_i0 PRJNA700095 66277 240 2.161677 5.1880248 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 172 1.59e-38   NTclustered gi|57903345|gb|AY729823.1| 100863 g65013 i0 80.519 49.5916666666667 231 39 95 3 13 240 669 896 Plectospira myriandra beta-tubulin gene, partial cds blastn 11902 172 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
23636161 23636161 PRJNA700095_P_NODE_4859_length_895_cov_2.790754_g3894_i0 PRJNA700095 4859 895 2.790754 24.9772483 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 507 1.6e-138   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g3894 i0 78.473 46.0424581005587 799 154 88 17 1 790 6334 7123 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 41208 507 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a
24909431 24909431 PRJNA700095_P_NODE_19120_length_406_cov_7.798799_g17857_i0 PRJNA700095 19120 406 7.798799 31.66312394 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 520 8.889999999999999e-143   NTclustered gi|325195057|emb|FR825852.1| 890382 g17857 i0 90.657 83.9630541871921 396 30 96 6 1 391 501 108 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 34089 520 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;