contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Nematoda"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5786717 | 5786717 | PRJNA700095_P_NODE_39145_length_278_cov_1.453659_g37881_i0 | PRJNA700095 | 39145 | 278 | 1.453659 | 4.04117202 | Nematoda environmental sample | 554024 | Nematoda | Nematoda | 472 | 1.6599999999999998e-128 | NTclustered | gi|2743156117|gb|PP910122.1| | 554024 | g37881 | i0 | 97.802 | 66.158273381295 | 273 | 6 | 98 | 0 | 6 | 278 | 580 | 308 | Nematoda environmental sample isolate SN_I large subunit ribosomal RNA gene, partial sequence | blastn | 18392 | 472 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Nematoda environmental sample | |||||
| 10887184 | 10887184 | PRJNA700095_P_NODE_20609_length_388_cov_1.587302_g19346_i0 | PRJNA700095 | 20609 | 388 | 1.587302 | 6.15873176 | Strongyloides ratti | 34506 | Nematoda | Nematoda | 363 | 1.51e-95 | NTclustered | gi|1376148845|ref|XM_024642710.1| | 34506 | g19346 | i0 | 84.658 | 94.5309278350515 | 365 | 54 | 94 | 2 | 25 | 388 | 1316 | 953 | Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA | blastn | 36678 | 363 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Strongyloididae | Strongyloides | Strongyloides ratti | |
| 12663766 | 12663766 | PRJNA700095_P_NODE_64730_length_241_cov_2.339286_g63466_i0 | PRJNA700095 | 64730 | 241 | 2.339286 | 5.63767926 | Metazoa | 33208 | Nematoda | Nematoda | 73.1 | 1.67e-8 | NTclustered | gi|256251567|emb|FM207826.1| | 6313 | g63466 | i0 | 80.645 | 0.771784232365145 | 93 | 18 | 39 | 0 | 148 | 240 | 434 | 342 | Angiostrongylus cantonensis partial mRNA ORF1 for Putative protein, clone 00012D12 | blastn | 186 | 73.1 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Metastrongylidae | Angiostrongylus | Angiostrongylus cantonensis | |
| 15985968 | 15985968 | PRJNA700095_P_NODE_70973_length_200_cov_5.874016_g69708_i0 | PRJNA700095 | 70973 | 200 | 5.874016 | 11.748032 | Strongyloides papillosus | 174720 | Nematoda | Nematoda | 52.8 | 0.017 | NTclustered | gi|690020769|emb|LM528349.1| | 174720 | g69708 | i0 | 100 | 0.14 | 28 | 0 | 14 | 0 | 12 | 39 | 805 | 832 | Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002678 | blastn | 28 | 52.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Strongyloididae | Strongyloides | Strongyloides papillosus | |
| 19810052 | 19810052 | PRJNA700095_P_NODE_24976_length_344_cov_1.701107_g23712_i0 | PRJNA700095 | 24976 | 344 | 1.701107 | 5.85180808 | Caenorhabditis elegans | 6239 | Nematoda | Nematoda | 52.8 | 0.033 | NTclustered | gi|413006602|emb|Z83230.2| | 6239 | g23712 | i0 | 100 | 0.162790697674419 | 28 | 0 | 8 | 0 | 87 | 114 | 2024 | 1997 | Caenorhabditis elegans Cosmid F56A8, complete sequence | blastn | 56 | 52.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis elegans |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;