RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA700095 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2459429 2459429 PRJNA700095_P_NODE_48362_length_257_cov_1.103261_g47098_i0 PRJNA700095 48362 257 1.103261 2.83538077 Corallococcus 83461 Bacteria Bacteria 436 5.52e-118   NTclustered gi|545790941|gb|KF270704.1| 35 g47098 i0 97.276 245.194552529183 257 7 100 0 1 257 876 620 Corallococcus macrosporus strain Ccm7 23S ribosomal RNA gene, partial sequence blastn 63015 436 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
7061767 7061767 PRJNA700095_P_NODE_33146_length_296_cov_2.304933_g31882_i0 PRJNA700095 33146 296 2.304933 6.82260168 Pyxidicoccus parkwayensis 2813578 Bacteria Bacteria 483 8.219999999999998e-132   NTclustered gi|1998505907|gb|CP071090.1| 2813578 g31882 i0 96.259 267.804054054054 294 11 99 0 1 294 2161209 2161502 Pyxidicoccus parkwaysis strain SCPEA02 chromosome blastn 79270 483 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus parkwayensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;