RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA700095 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3234065 3234065 PRJNA700095_P_NODE_16323_length_451_cov_4.624339_g15060_i0 PRJNA700095 16323 451 4.624339 20.85576889 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 244 6.72e-60   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g15060 i0 83.333 9.019955654102 276 34 59 6 52 316 3666 3940 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4068 244 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
7061724 7061724 PRJNA700095_P_NODE_23526_length_356_cov_6.123675_g22262_i0 PRJNA700095 23526 356 6.123675 21.800283 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 217 1.13e-51   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g22262 i0 82.156 27.4550561797753 269 33 73 12 1 259 2043 2306 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9774 217 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
9611700 9611700 PRJNA700095_P_NODE_41648_length_271_cov_5.898990_g40384_i0 PRJNA700095 41648 271 5.89899 15.9862629 Acrasis takarsan 1008808 Heterolobosea other_Eukaryota 497 2.66e-136   NTclustered gi|330413923|gb|HM114347.1| 1008808 g40384 i0 99.631 69.6346863468635 271 1 100 0 1 271 265 535 Acrasis takarsan strain THAI08-23g-1 18S ribosomal RNA gene, partial sequence blastn 18871 497 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis takarsan
12162284 12162284 PRJNA700095_P_NODE_22290_length_369_cov_1.949324_g21026_i0 PRJNA700095 22290 369 1.949324 7.19300556 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 54.7 0.01   NTclustered gi|290986782|ref|XM_002676057.1| 5762 g21026 i0 84.483 0.157181571815718 58 6 16 1 164 221 1288 1342 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_80087), partial mRNA blastn 58 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13436937 13436937 PRJNA700095_P_NODE_34111_length_292_cov_2.031963_g32847_i0 PRJNA700095 34111 292 2.031963 5.93333196 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.8 0.027   NTclustered gi|2124401526|ref|XM_044700116.1| 51637 g32847 i0 100 0.0958904109589041 28 0 10 0 156 183 1138 1165 Naegleria lovaniensis uncharacterized protein (C9374_009880), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
22360310 22360310 PRJNA700095_P_NODE_22658_length_365_cov_4.167808_g21394_i0 PRJNA700095 22658 365 4.167808 15.2124992 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 182 4.23e-41   NTclustered gi|2651357799|gb|PP174312.1| 1892890 g21394 i0 83.495 43.0684931506849 206 22 55 10 1 201 3025 2827 Heterolobosea sp. isolate S28D10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15720 182 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
22360436 22360436 PRJNA700095_P_NODE_46698_length_260_cov_1.604278_g45434_i0 PRJNA700095 46698 260 1.604278 4.1711228 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 152 2.27e-32   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g45434 i0 89.344 2.71538461538462 122 12 47 1 139 260 2923 3043 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 706 152 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
24909426 24909426 PRJNA700095_P_NODE_17560_length_430_cov_1.277311_g16297_i0 PRJNA700095 17560 430 1.277311 5.4924373 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.012   NTclustered gi|2031947758|emb|OD958609.1| 5763 g16297 i0 100 0.0674418604651163 29 0 7 0 12 40 42 14 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;