RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA700095 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8336543 8336543 PRJNA700095_P_NODE_68227_length_231_cov_2.044304_g66962_i0 PRJNA700095 68227 231 2.044304 4.72234224 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|2707362230|ref|XM_064107634.1| 7653 g66962 i0 94.444 0.155844155844156 36 1 15 1 6 40 2481 2446 PREDICTED: Lytechinus pictus transient receptor potential cation channel subfamily A member 1 homolog (LOC129272398), mRNA blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
13437018 13437018 PRJNA700095_P_NODE_51871_length_250_cov_2.474576_g50607_i0 PRJNA700095 51871 250 2.474576 6.18644 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|1752346178|ref|XM_781172.5| 7668 g50607 i0 96.875 0.256 32 1 13 0 194 225 3310 3341 PREDICTED: Strongylocentrotus purpuratus trichohyalin (LOC581159), transcript variant X1, mRNA blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
21586411 21586411 PRJNA700095_P_NODE_20197_length_393_cov_1.393750_g18934_i0 PRJNA700095 20197 393 1.39375 5.4774375 Metazoa 33208 Echinodermata other_Eukaryota 52.8 0.038   NTclustered gi|2037917966|ref|XM_041605365.1| 7654 g18934 i0 100 0.427480916030534 28 0 7 0 263 290 1285 1258 PREDICTED: Lytechinus variegatus proteolipid protein DM beta-like (LOC121412574), mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;