RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 8 ✖

bioproject 1

  • PRJNA700095 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3735966 3735966 PRJNA700095_P_NODE_24443_length_348_cov_3.232727_g23179_i0 PRJNA700095 24443 348 3.232727 11.24988996 Deinococcus 1298 Bacteria Bacteria 610 4.34e-170   NTclustered gi|1435316362|gb|CP031158.1| 980427 g23179 i0 98.286 204.175287356322 350 3 100 3 1 348 1791895 1792243 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 71053 610 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
5012549 5012549 PRJNA700095_P_NODE_69904_length_217_cov_4.090278_g68639_i0 PRJNA700095 69904 217 4.090278 8.87590326 Deinococcus 1298 Bacteria Bacteria 296 8.02e-76   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g68639 i0 91.364 258.142857142857 220 14 100 3 1 217 423071 422854 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 56017 296 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
8837170 8837170 PRJNA700095_P_NODE_7067_length_749_cov_5.717456_g5945_i0 PRJNA700095 7067 749 5.717456 42.82374544 Deinococcus 1298 Bacteria Bacteria 1195 0   NTclustered gi|470483488|ref|NR_076595.1| 310783 g5945 i0 95.467 213.648865153538 750 32 100 2 1 749 1444 696 Deinococcus deserti strain VCD115 23S ribosomal RNA gene, complete sequence blastn 160023 1195 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti
11387839 11387839 PRJNA700095_P_NODE_70049_length_214_cov_5.588652_g68784_i0 PRJNA700095 70049 214 5.588652 11.95971528 Deinococcus 1298 Bacteria Bacteria 390 3.519999999999999e-104   NTclustered gi|1562202923|gb|MK446833.1| 47478 g68784 i0 100 104.616822429907 211 0 99 0 1 211 462 672 Deinococcus sp. strain NW-56 16S ribosomal RNA gene, partial sequence blastn 22388 390 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
19035966 19035966 PRJNA700095_P_NODE_29195_length_314_cov_5.369295_g27931_i0 PRJNA700095 29195 314 5.369295 16.8595863 root 1 Root_unresolved Root_unresolved 568 2.3599999999999998e-157   NTclustered gi|1073549716|gb|KX946495.1| 47478 g27931 i0 99.677 106.178343949045 310 1 99 0 5 314 442 751 Deinococcus sp. strain FX4 16S ribosomal RNA gene, partial sequence blastn 33340 573 0.991273996509599 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
21586468 21586468 PRJNA700095_P_NODE_38937_length_278_cov_3.663415_g37673_i0 PRJNA700095 38937 278 3.663415 10.1842937 Deinococcus 1298 Bacteria Bacteria 514 2.7199999999999996e-141   NTclustered gi|2113031129|gb|OK500351.1| 47478 g37673 i0 100 106 278 0 100 0 1 278 458 735 Deinococcus sp. strain R11 16S ribosomal RNA gene, partial sequence blastn 29468 514 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
22360276 22360276 PRJNA700095_P_NODE_15458_length_468_cov_5.706329_g14197_i0 PRJNA700095 15458 468 5.706329 26.70561972 Trueperaceae bacterium 2026798 Bacteria Bacteria 654 0   NTclustered gi|2621706202|emb|OY764543.1| 2026798 g14197 i0 91.898 456.760683760684 469 36 99 2 2 468 2559632 2559164 MAG: Trueperaceae bacterium isolate 617606ba-ac04-44ed-b980-3de5d93b502e genome assembly, chromosome: 1 blastn 213764 654 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
25410748 25410748 PRJNA700095_P_NODE_38180_length_280_cov_2.681159_g36916_i0 PRJNA700095 38180 280 2.681159 7.5072452 Truepera 332248 Bacteria Bacteria 340 4.919999999999999e-89   NTclustered gi|470486385|ref|NR_076754.1| 332249 g36916 i0 88.571 378.132142857143 280 32 100 0 1 280 329 50 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 105877 340 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;