RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 11 ✖

bioproject 1

  • PRJNA700095 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
683344 683344 PRJNA700095_P_NODE_62181_length_243_cov_0.905882_g60917_i0 PRJNA700095 62181 243 0.905882 2.20129326 Potexvirus flavitrifolii 3433843 Viruses Viruses 394 3.16e-105   NTclustered gi|2329659981|gb|OK558678.1| 12177 g60917 i0 95.885 6 243 10 100 0 1 243 6561 6319 Clover yellow mosaic virus isolate Tantalus ORF1, ORF2, ORF3, ORF4, and ORF5 genes, complete cds blastn 1458 394 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
4511188 4511188 PRJNA700095_P_NODE_29284_length_314_cov_1.784232_g28020_i0 PRJNA700095 29284 314 1.784232 5.60248848 Potexvirus trifolii 3433859 Viruses Viruses 523 5.18e-144   NTclustered gi|1843793411|gb|MN399740.1| 12188 g28020 i0 96.805 19.9267515923567 313 10 99 0 1 313 1762 1450 White clover mosaic virus isolate Muenster_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 6257 523 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
4511286 4511286 PRJNA700095_P_NODE_4724_length_910_cov_1.492234_g3775_i0 PRJNA700095 4724 910 1.492234 13.5793294 Potexvirus trifolii 3433859 Viruses Viruses 1528 0   NTclustered gi|1389531330|gb|MG600296.1| 12188 g3775 i0 96.93 24.2692307692308 912 26 100 1 1 910 162 1073 White clover mosaic virus isolate WCMV-PV1 putative replicase protein and putative TGB1 protein genes, complete cds; and putative TGB2 protein gene, partial cds blastn 22085 1528 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
5786741 5786741 PRJNA700095_P_NODE_42145_length_270_cov_2.350254_g40881_i0 PRJNA700095 42145 270 2.350254 6.3456858 Potexvirus flavitrifolii 3433843 Viruses Viruses 405 1.65e-108   NTclustered gi|9629178|ref|NC_001753.1| 12177 g40881 i0 93.704 5 270 17 100 0 1 270 4703 4972 Clover yellow mosaic virus, complete genome blastn 1350 405 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
8336548 8336548 PRJNA700095_P_NODE_68867_length_228_cov_2.683871_g67602_i0 PRJNA700095 68867 228 2.683871 6.11922588 Potexvirus flavitrifolii 3433843 Viruses Viruses 361 2.97e-95   NTclustered gi|9629178|ref|NC_001753.1| 12177 g67602 i0 95.175 5.63157894736842 228 11 100 0 1 228 978 751 Clover yellow mosaic virus, complete genome blastn 1284 361 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
9611680 9611680 PRJNA700095_P_NODE_37908_length_281_cov_1.596154_g36644_i0 PRJNA700095 37908 281 1.596154 4.48519274 Potexvirus flavitrifolii 3433843 Viruses Viruses 459 1.31e-124   NTclustered gi|2329659981|gb|OK558678.1| 12177 g36644 i0 96.085 8.94306049822064 281 11 100 0 1 281 653 373 Clover yellow mosaic virus isolate Tantalus ORF1, ORF2, ORF3, ORF4, and ORF5 genes, complete cds blastn 2513 459 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
10887368 10887368 PRJNA700095_P_NODE_58389_length_246_cov_0.884393_g57125_i0 PRJNA700095 58389 246 0.884393 2.17560678 Potexvirus flavitrifolii 3433843 Viruses Viruses 394 3.2e-105   NTclustered gi|9629178|ref|NC_001753.1| 12177 g57125 i0 95.528 5 246 11 100 0 1 246 3352 3597 Clover yellow mosaic virus, complete genome blastn 1230 394 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
10887385 10887385 PRJNA700095_P_NODE_60409_length_244_cov_1.701754_g59145_i0 PRJNA700095 60409 244 1.701754 4.15227976 Potexvirus trifolii 3433859 Viruses Viruses 374 4.1399999999999986e-99   NTclustered gi|1967559262|gb|MT151614.1| 12188 g59145 i0 94.262 19.5 244 14 100 0 1 244 1445 1202 White clover mosaic virus isolate Heron RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 4758 374 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
14712214 14712214 PRJNA700095_P_NODE_42092_length_270_cov_3.862944_g40828_i0 PRJNA700095 42092 270 3.862944 10.4299488 Potexvirus trifolii 3433859 Viruses Viruses 453 5.810000000000001e-123   NTclustered gi|1843793417|gb|MN399741.1| 12188 g40828 i0 97.026 19.9444444444444 269 8 99 0 1 269 3514 3782 White clover mosaic virus isolate Kreis Stormarn_17 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 5385 453 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
17261005 17261005 PRJNA700095_P_NODE_17934_length_424_cov_2.116809_g16671_i0 PRJNA700095 17934 424 2.116809 8.9752701600000009 Potexvirus flavitrifolii 3433843 Viruses Viruses 640 6.85e-179   NTclustered gi|2329659981|gb|OK558678.1| 12177 g16671 i0 93.868 5.2122641509434 424 26 100 0 1 424 5026 4603 Clover yellow mosaic virus isolate Tantalus ORF1, ORF2, ORF3, ORF4, and ORF5 genes, complete cds blastn 2210 640 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
22360459 22360459 PRJNA700095_P_NODE_51358_length_251_cov_0.865169_g50094_i0 PRJNA700095 51358 251 0.865169 2.17157419 Carlavirus latensallii 3427762 Viruses Viruses 381 2.549999999999999e-101   NTclustered gi|359471925|gb|JF320810.1| 47900 g50094 i0 94.024 13.9880478087649 251 15 100 0 1 251 2812 3062 Garlic common latent virus isolate WA-1, complete genome blastn 3511 381 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensallii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;