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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA700095" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA700095 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7061747 7061747 PRJNA700095_P_NODE_28586_length_318_cov_1.840816_g27322_i0 PRJNA700095 28586 318 1.840816 5.85379488 Phalansterium solitarium 136499 Evosea other_Eukaryota 327 4.42e-85   NTclustered gi|300078500|gb|GU001162.1| 136499 g27322 i0 85.58 76.2358490566038 319 39 99 5 1 317 2065 2378 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24243 327 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
8336284 8336284 PRJNA700095_P_NODE_18587_length_414_cov_1.665689_g17324_i0 PRJNA700095 18587 414 1.665689 6.89595246 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 449 1.2099999999999998e-121   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g17324 i0 86.288 9.13285024154589 423 46 100 8 1 414 3835 3416 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3781 449 1 Eukaryota Amoebozoa             Amoebozoa sp.
8336286 8336286 PRJNA700095_P_NODE_18887_length_410_cov_1.593472_g17624_i0 PRJNA700095 18887 410 1.593472 6.5332352 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.011   NTclustered gi|831766037|ref|XM_012896213.1| 1410327 g17624 i0 100 0.0707317073170732 29 0 7 0 247 275 522 550 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
8336512 8336512 PRJNA700095_P_NODE_62287_length_243_cov_0.905882_g61023_i0 PRJNA700095 62287 243 0.905882 2.20129326 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 62.1 3.64e-5   NTclustered gi|470405280|ref|XM_004335798.1| 1257118 g61023 i0 100 0.135802469135802 33 0 14 0 22 54 162 130 Acanthamoeba castellanii str. Neff RNA binding motif containing protein (ACA1_076860), partial mRNA blastn 33 62.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11387838 11387838 PRJNA700095_P_NODE_69609_length_222_cov_5.046980_g68344_i0 PRJNA700095 69609 222 5.04698 11.2042956 Acanthamoeba 5754 Discosea other_Eukaryota 411 2.8199999999999996e-110   NTclustered gi|1776318159|gb|MN700286.1| 5755 g68344 i0 100 100 222 0 100 0 1 222 232 11 Acanthamoeba castellanii isolate PD8-B17 small subunit ribosomal RNA gene, partial sequence blastn 22200 411 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13938104 13938104 PRJNA700095_P_NODE_17071_length_438_cov_2.150685_g15808_i0 PRJNA700095 17071 438 2.150685 9.4200003 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.4 0.001   NTclustered gi|330791506|ref|XM_003283786.1| 5786 g15808 i0 92.5 1.13013698630137 40 3 9 0 237 276 6288 6327 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_45096), partial mRNA blastn 495 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
15985730 15985730 PRJNA700095_P_NODE_18813_length_411_cov_1.905325_g17550_i0 PRJNA700095 18813 411 1.905325 7.83088575 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 8.49e-4   NTclustered gi|66801572|ref|XM_629710.1| 352472 g17550 i0 100 0.420924574209246 31 0 8 0 113 143 462 492 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0292330) mRNA, complete cds blastn 173 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20310493 20310493 PRJNA700095_P_NODE_18336_length_418_cov_1.759420_g17073_i0 PRJNA700095 18336 418 1.75942 7.3543756 Dictyostelium 5782 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|23953894|gb|AY159040.1| 44689 g17073 i0 94.444 0.643540669856459 36 2 9 0 1 36 7832 7867 Dictyostelium discoideum LvsD (lvsD) gene, partial cds blastn 269 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
21085558 21085558 PRJNA700095_P_NODE_29277_length_314_cov_1.858921_g28013_i0 PRJNA700095 29277 314 1.858921 5.83701194 Dictyostelium discoideum 44689 Evosea other_Eukaryota 259 1.6100000000000002e-64   NTclustered gi|66817509|ref|XM_637516.1| 352472 g28013 i0 81.587 42.3089171974522 315 56 100 2 1 314 604 917 Dictyostelium discoideum AX4 vacuolar H+ ATPase B subunit (vatB) mRNA, complete cds blastn 13285 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
21085717 21085717 PRJNA700095_P_NODE_60557_length_244_cov_1.385965_g59293_i0 PRJNA700095 60557 244 1.385965 3.3817546 Physarum sp. AMFD-2018a 2498839 Evosea other_Eukaryota 429 8.699999999999998e-116   NTclustered gi|1543031424|gb|MK336179.1| 2498839 g59293 i0 98.755 92.7008196721311 241 3 99 0 1 241 1998 2238 Physarum sp. AMFD-2018a voucher BW2014 small subunit ribosomal RNA gene, partial sequence blastn 22619 429 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum sp. AMFD-2018a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;