RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA699078" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA699078 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3233252 3233252 PRJNA699078_S_NODE_46583_length_251_cov_2.594059_g45634_i0 PRJNA699078 46583 251 2.594059 6.51108809 Strongyloides papillosus 174720 Nematoda Nematoda 95.3 3.73e-15   NTclustered gi|687022650|emb|LM525564.1| 174720 g45634 i0 85.87 12.7529880478088 92 9 36 4 161 250 461188 461099 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000009 blastn 3201 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8335620 8335620 PRJNA699078_S_NODE_56087_length_227_cov_1.764045_g55138_i0 PRJNA699078 56087 227 1.764045 4.00438215 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687023266|emb|LM525931.1| 174720 g55138 i0 100 0.127753303964758 29 0 13 0 55 83 5473 5501 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000303 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
12160978 12160978 PRJNA699078_S_NODE_13130_length_435_cov_72.339378_g12198_i0 PRJNA699078 13130 435 72.339378 314.6762943 Caenorhabditis elegans 6239 Nematoda Nematoda 82.4 5.36e-11   NTclustered gi|351047525|emb|FO080366.1| 6239 g12198 i0 96 0.570114942528736 50 2 11 0 383 432 15373 15422 Caenorhabditis elegans Cosmid T26A5, complete sequence blastn 248 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18533774 18533774 PRJNA699078_S_NODE_22455_length_357_cov_3.474026_g21506_i0 PRJNA699078 22455 357 3.474026 12.40227282 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.034   NTclustered gi|1557394408|emb|LR031564.1| 45931 g21506 i0 100 0.0784313725490196 28 0 8 0 330 357 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;