RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10885384 10885384 PRJNA698538_S_NODE_17909_length_295_cov_1.734234_g17743_i0 PRJNA698538 17909 295 1.734234 5.1159903 Habrotrocha constricta 104786 Rotifera other_Eukaryota 291 5.3299999999999986e-74   NTclustered gi|402761757|gb|JX184010.1| 104786 g17743 i0 84.407 21.2542372881356 295 46 100 0 1 295 588 294 Habrotrocha constricta cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 6270 291 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
13435343 13435343 PRJNA698538_S_NODE_31571_length_227_cov_2.461039_g31405_i0 PRJNA698538 31571 227 2.461039 5.58655853 Adineta vaga 104782 Rotifera other_Eukaryota 331 2.32e-86   NTclustered gi|197321809|gb|EU853690.1| 104782 g31405 i0 92.952 212.356828193833 227 16 100 0 1 227 223 449 Adineta vaga histone H2A variant H2Abd1 copy 2d (H2Abd1) gene, partial cds blastn 48205 331 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
23634402 23634402 PRJNA698538_S_NODE_27619_length_248_cov_1.320000_g27453_i0 PRJNA698538 27619 248 1.32 3.2736 Habrotrocha constricta 104786 Rotifera other_Eukaryota 276 1.22e-69   NTclustered gi|402761789|gb|JX184026.1| 104786 g27453 i0 86.694 51.9637096774194 248 33 100 0 1 248 1028 781 Habrotrocha constricta cytochrome b (CYTB) gene, complete cds; mitochondrial blastn 12887 276 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;