RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA698538 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5784754 5784754 PRJNA698538_S_NODE_15245_length_311_cov_2.226891_g15079_i0 PRJNA698538 15245 311 2.226891 6.92563101 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.008   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g15079 i0 92.308 0.215434083601286 39 1 13 2 1 39 13 49 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 67 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
8334389 8334389 PRJNA698538_S_NODE_11667_length_336_cov_1.376426_g11501_i0 PRJNA698538 11667 336 1.376426 4.62479136 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.009   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g11501 i0 100 0.169642857142857 29 0 9 0 308 336 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
21083816 21083816 PRJNA698538_S_NODE_25437_length_256_cov_3.437158_g25271_i0 PRJNA698538 25437 256 3.437158 8.79912448 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 344 3.43e-90   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g25271 i0 90.625 1 256 24 100 0 1 256 6759 7014 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 256 344 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
22358778 22358778 PRJNA698538_S_NODE_9358_length_355_cov_3.996454_g9192_i0 PRJNA698538 9358 355 3.996454 14.1874117 Skokie dicistro-like virus 2789443 Viruses Viruses 573 5.799999999999999e-159   NTclustered gi|1935607033|gb|MT747992.1| 2789443 g9192 i0 95.775 1 355 15 100 0 1 355 2942 3296 Skokie dicistro-like virus strain USAdf-2 polyprotein 1 and polyprotein 2 genes, complete cds blastn 355 573 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
24907894 24907894 PRJNA698538_S_NODE_5740_length_398_cov_10.098462_g5574_i0 PRJNA698538 5740 398 10.098462 40.19187876 Zebrafish picornavirus 1 2304617 Viruses Viruses 695 0   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g5574 i0 98.241 4.25376884422111 398 6 100 1 1 398 7832 8228 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1693 695 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;