RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8334416 8334416 PRJNA698538_S_NODE_13847_length_320_cov_2.044534_g13681_i0 PRJNA698538 13847 320 2.044534 6.5425088 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 104 8.17e-18   NTclustered gi|2187152065|emb|OV788643.1| 658143 g13681 i0 81.967 5.096875 122 22 38 0 9 130 247478 247357 uncultured Tenericutes bacterium isolate min17_bin32 genome assembly, chromosome: 1 blastn 1631 104 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
13435042 13435042 PRJNA698538_S_NODE_1011_length_648_cov_9.890435_g854_i0 PRJNA698538 1011 648 9.890435 64.0900188 Malacoplasma muris 2119 Bacteria Bacteria 431 7.08e-116   NTclustered gi|2890642799|gb|CP177248.1| 2119 g854 i0 82.857 43.0200617283951 490 74 75 9 164 648 776060 776544 Malacoplasma muris strain RIII-4 chromosome, complete genome blastn 27877 431 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma muris
14710509 14710509 PRJNA698538_S_NODE_4292_length_427_cov_6.889831_g4126_i0 PRJNA698538 4292 427 6.889831 29.41957837 Acholeplasma brassicae 61635 Bacteria Bacteria 150 1.4199999999999998e-31   NTclustered gi|549142279|emb|FO681348.1| 61635 g4126 i0 78.333 1.15222482435597 240 46 56 5 21 257 326383 326619 complete chromosome Acholeplasma brassicae blastn 492 150 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;