RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9609672 9609672 PRJNA698538_S_NODE_11788_length_335_cov_1.763359_g11622_i0 PRJNA698538 11788 335 1.763359 5.90725265 Helicobacter aurati 137778 Bacteria Bacteria 590 5.409999999999999e-164   NTclustered gi|50957156|gb|AY596241.1| 137778 g11622 i0 98.507 140.671641791045 335 4 100 1 1 335 616 949 Helicobacter aurati strain ATCC BBA-1 23S ribosomal RNA gene, partial sequence blastn 47125 590 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter aurati
21083823 21083823 PRJNA698538_S_NODE_25857_length_254_cov_5.243094_g25691_i0 PRJNA698538 25857 254 5.243094 13.31745876 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.023   NTclustered gi|1474785413|gb|CP032101.1| 505249 g25691 i0 100 0.110236220472441 28 0 11 0 93 120 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
21084005 21084005 PRJNA698538_S_NODE_9377_length_355_cov_2.946809_g9211_i0 PRJNA698538 9377 355 2.946809 10.46117195 Sulfurovum sp. XGS-02 2925411 Bacteria Bacteria 58.4 7.22e-4   NTclustered gi|2233050326|gb|CP093312.1| 2925411 g9211 i0 94.595 0.284507042253521 37 2 10 0 43 79 438265 438301 Sulfurovum sp. XGS-02 chromosome, complete genome blastn 101 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. XGS-02

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;