RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA698538 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5784701 5784701 PRJNA698538_S_NODE_12145_length_332_cov_2.652510_g11979_i0 PRJNA698538 12145 332 2.65251 8.8063332 Chromera velia 505693 SAR_Eukaryotes SAR_Eukaryotes 119 3.04e-22   NTclustered gi|157065025|gb|EU106870.1| 505693 g11979 i0 93.75 568.262048192771 80 3 24 2 254 332 2442 2520 Chromera velia large subunit ribosomal RNA gene, partial sequence blastn 188663 119 1 Eukaryota Sar         Chromeraceae Chromera Chromera velia
7060017 7060017 PRJNA698538_S_NODE_2606_length_486_cov_88.266344_g2440_i0 PRJNA698538 2606 486 88.266344 428.97443184 Hematodinium sp. 173654 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.047   NTclustered gi|357196844|emb|HE610736.1| 173654 g2440 i0 100 0.0576131687242798 28 0 6 0 1 28 2 29 Hematodinium sp. mitochondrial partial small subunit ribosomal RNA (ssu rRNA gene), clone 16 blastn 28 52.8 1 Eukaryota Sar     Dinophyceae Syndiniales Syndiniaceae Hematodinium Hematodinium sp.
7060079 7060079 PRJNA698538_S_NODE_30486_length_238_cov_2.054545_g30320_i0 PRJNA698538 30486 238 2.054545 4.8898171 Phalacroma oxytoxoides 447216 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|2742502725|gb|PP905714.1| 447216 g30320 i0 100 0.235294117647059 28 0 12 0 1 28 1198 1225 Phalacroma oxytoxoides isolate PhaFC3 small subunit ribosomal RNA gene, partial sequence blastn 56 52.8 1 Eukaryota Sar     Dinophyceae Dinophysales Dinophysaceae Phalacroma Phalacroma oxytoxoides
12160402 12160402 PRJNA698538_S_NODE_13010_length_326_cov_1.118577_g12844_i0 PRJNA698538 13010 326 1.118577 3.64656102 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|820700576|tpe|LN714500.1| 432359 g12844 i0 100 0.0858895705521472 28 0 9 0 213 240 5764249 5764222 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
12160599 12160599 PRJNA698538_S_NODE_2550_length_490_cov_3.911271_g2384_i0 PRJNA698538 2550 490 3.911271 19.1652279 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.013   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g2384 i0 100 0.287755102040816 29 0 6 0 462 490 38 10 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 141 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
14710529 14710529 PRJNA698538_S_NODE_5612_length_400_cov_6.394495_g5446_i0 PRJNA698538 5612 400 6.394495 25.57798 Remanella sp. 1 BS-2022 2930476 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|2261269021|emb|OX095846.1| 2930476 g5446 i0 100 0.2875 30 0 8 0 371 400 41 12 Remanella sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863273, clone N44:18S_rRNA::TRINITY_DN644_c0_g1_i12:99-1693(+) blastn 115 56.5 1 Eukaryota Sar   Ciliophora Karyorelictea Loxodida Loxodidae Remanella Remanella sp. 1 BS-2022
17259157 17259157 PRJNA698538_S_NODE_15614_length_309_cov_1.161017_g15448_i0 PRJNA698538 15614 309 1.161017 3.58754253 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 566 8.33e-157   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g15448 i0 99.676 20.9223300970874 309 1 100 0 1 309 949 1257 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 6465 566 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
19808351 19808351 PRJNA698538_S_NODE_26116_length_253_cov_3.100000_g25950_i0 PRJNA698538 26116 253 3.1 7.843 Fragilidium sp. 2316360 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.06e-5   NTclustered gi|2076757797|gb|MZ712997.1| 2316360 g25950 i0 100 13.9920948616601 34 0 13 0 1 34 638 605 Fragilidium sp. isolate FragDinoMRT2015_sp2 large subunit ribosomal RNA gene, partial sequence blastn 3540 63.9 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrophacaceae Fragilidium Fragilidium sp.
22358501 22358501 PRJNA698538_S_NODE_19878_length_284_cov_1.672986_g19712_i0 PRJNA698538 19878 284 1.672986 4.75128024 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g19712 i0 100 0.0985915492957746 28 0 10 0 257 284 38 11 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;