RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA698538" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA698538 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4509539 4509539 PRJNA698538_S_NODE_30424_length_238_cov_3.466667_g30258_i0 PRJNA698538 30424 238 3.466667 8.25066746 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 56.5 0.002   NTclustered gi|1002435044|ref|XM_015808639.1| 157538 g30258 i0 92.308 1.96638655462185 39 3 16 0 73 111 936 898 Leptomonas pyrrhocoris putative nucleolar RNA-binding protein mRNA blastn 468 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
15984081 15984081 PRJNA698538_S_NODE_22513_length_270_cov_2.771574_g22347_i0 PRJNA698538 22513 270 2.771574 7.4832498 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 379 9.989999999999998e-101   NTclustered gi|290985904|ref|XM_002675619.1| 5762 g22347 i0 97.309 0.825925925925926 223 6 83 0 48 270 451 229 Naegleria gruberi ribosomal protein S13 (NAEGRDRAFT_82651), mRNA blastn 223 379 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24907805 24907805 PRJNA698538_S_NODE_28280_length_246_cov_1.335260_g28114_i0 PRJNA698538 28280 246 1.33526 3.2847396 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g28114 i0 100 0.113821138211382 28 0 11 0 3 30 8 35 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;