RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA695273 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8835768 8835768 PRJNA695273_P_NODE_4547_length_1454_cov_1.666184_g4071_i0 PRJNA695273 4547 1454 1.666184 24.22631536 root 1 Root_unresolved Root_unresolved 2669 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g4071 i0 99.794 9.29711141678129 1454 3 100 0 1 1454 251 1704 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 13518 2669 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
10111934 10111934 PRJNA695273_P_NODE_74128_length_320_cov_2.850202_g73370_i0 PRJNA695273 74128 320 2.850202 9.1206464 Thermococcus 2263 Archaea Archaea 544 4.0599999999999997e-150   NTclustered gi|189908859|gb|EU571472.1| 342948 g73370 i0 100 1.8375 294 0 92 0 25 318 4 297 Thermococcus onnurineus dITPase gene, complete cds blastn 588 544 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus onnurineus
10881554 10881554 PRJNA695273_P_NODE_157329_length_242_cov_0.911243_g156571_i0 PRJNA695273 157329 242 0.911243 2.20520806 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 351 1.92e-92   NTclustered gi|808354332|gb|CP011097.2| 1603555 g156571 i0 92.946 5.9504132231405 241 17 99 0 1 241 1612160 1612400 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 1440 351 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
12661457 12661457 PRJNA695273_P_NODE_13510_length_789_cov_2.428771_g12796_i0 PRJNA695273 13510 789 2.428771 19.16300319 root 1 Root_unresolved Root_unresolved 1297 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g12796 i0 99.718 6.23954372623574 708 2 90 0 1 708 1854 2561 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 4923 1297 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
19803516 19803516 PRJNA695273_P_NODE_120156_length_257_cov_0.923913_g119398_i0 PRJNA695273 120156 257 0.923913 2.37445641 Natronococcus wangiae 3068275 Archaea Archaea 276 1.27e-69   NTclustered gi|2563036162|gb|CP132294.1| 3068275 g119398 i0 86.154 2.66147859922179 260 30 100 5 1 257 1433739 1433483 Natronococcus wangiae strain AD-5 chromosome, complete genome blastn 684 276 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae
24903344 24903344 PRJNA695273_P_NODE_138700_length_247_cov_0.885057_g137942_i0 PRJNA695273 138700 247 0.885057 2.18609079 Natronococcus wangiae 3068275 Archaea Archaea 265 2.63e-66   NTclustered gi|2563036162|gb|CP132294.1| 3068275 g137942 i0 86.122 4.7085020242915 245 34 99 0 1 245 2620132 2619888 Natronococcus wangiae strain AD-5 chromosome, complete genome blastn 1163 265 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;