RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA695273 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5782252 5782252 PRJNA695273_P_NODE_73145_length_323_cov_0.784000_g72387_i0 PRJNA695273 73145 323 0.784 2.53232 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 78.7 5e-10   NTclustered gi|2874253690|emb|OY969416.1| 412056 g72387 i0 91.525 0.359133126934985 59 1 18 4 142 199 62962 62907 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 116 78.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
10880844 10880844 PRJNA695273_P_NODE_128049_length_250_cov_1.587571_g127291_i0 PRJNA695273 128049 250 1.587571 3.9689275 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 156 1.68e-33   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g127291 i0 78.75 4 240 45 94 3 12 245 622969 623208 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 1000 156 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
10881034 10881034 PRJNA695273_P_NODE_135749_length_248_cov_0.880000_g134991_i0 PRJNA695273 135749 248 0.88 2.1824 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 226 1.2499999999999999e-54   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g134991 i0 83.265 0.987903225806452 245 41 99 0 1 245 2415554 2415798 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 245 226 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
13935672 13935672 PRJNA695273_P_NODE_108251_length_270_cov_1.908629_g107493_i0 PRJNA695273 108251 270 1.908629 5.1532983 Verrucomicrobiota 74201 Bacteria Bacteria 344 3.65e-90   NTclustered gi|2874253952|emb|OY970277.1| 412056 g107493 i0 89.668 228.114814814815 271 26 100 2 1 270 2750497 2750228 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 61591 344 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15979030 15979030 PRJNA695273_P_NODE_106833_length_272_cov_1.386935_g106075_i0 PRJNA695273 106833 272 1.386935 3.7724632 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 270 6.329999999999999e-68   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g106075 i0 84.672 1.00735294117647 274 38 100 4 1 272 1400605 1400334 Luteolibacter sp. SL250 chromosome blastn 274 270 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
15980122 15980122 PRJNA695273_P_NODE_155133_length_242_cov_1.473373_g154375_i0 PRJNA695273 155133 242 1.473373 3.56556266 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 398 2.4299999999999994e-106   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g154375 i0 97.046 37.8140495867769 237 6 98 1 1 237 2120063 2120298 Luteolibacter sp. SL250 chromosome blastn 9151 398 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
17254602 17254602 PRJNA695273_P_NODE_124134_length_252_cov_1.189944_g123376_i0 PRJNA695273 124134 252 1.189944 2.99865888 Sulfuriroseicoccus oceanibius 2707525 Bacteria Bacteria 154 6.09e-33   NTclustered gi|1953472588|gb|CP066776.1| 2707525 g123376 i0 81.152 55.1746031746032 191 36 76 0 3 193 3194731 3194921 Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome blastn 13904 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Sulfuriroseicoccus Sulfuriroseicoccus oceanibius
17255050 17255050 PRJNA695273_P_NODE_142434_length_246_cov_0.890173_g141676_i0 PRJNA695273 142434 246 0.890173 2.18982558 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 241 4.42e-59   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g141676 i0 84.711 10.1219512195122 242 35 98 2 2 242 5445625 5445385 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 2490 241 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
22353761 22353761 PRJNA695273_P_NODE_111138_length_267_cov_1.525773_g110380_i0 PRJNA695273 111138 267 1.525773 4.07381391 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 300 7.9e-77   NTclustered gi|2874253793|emb|OY969777.1| 412056 g110380 i0 87.891 48.5205992509363 256 29 96 2 12 266 2341541 2341795 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 blastn 12955 300 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;