RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA695273 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1954031 1954031 PRJNA695273_P_NODE_36782_length_448_cov_1.232000_g36024_i0 PRJNA695273 36782 448 1.232 5.51936 Desulfosudis oleivorans 181663 Bacteria Bacteria 54.7 0.012   NTclustered gi|158508843|gb|CP000859.1| 96561 g36024 i0 100 0.127232142857143 29 0 6 0 418 446 962766 962738 Desulfococcus oleovorans Hxd3, complete genome blastn 57 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
24902653 24902653 PRJNA695273_P_NODE_108340_length_270_cov_1.563452_g107582_i0 PRJNA695273 108340 270 1.563452 4.2213204 Pseudodesulfovibrio mercurii 641491 Bacteria Bacteria 189 1.8099999999999993e-43   NTclustered gi|365906293|gb|CP003220.1| 641491 g107582 i0 82.805 8.05925925925926 221 28 80 10 55 270 2468446 2468231 Pseudodesulfovibrio mercurii strain ND132 chromosome, complete genome blastn 2176 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio mercurii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;