RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA695273 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1182092 1182092 PRJNA695273_P_NODE_136521_length_248_cov_0.880000_g135763_i0 PRJNA695273 136521 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 387 5.409999999999998e-103   NTclustered gi|2265113193|gb|CP051148.1| 69710 g135763 i0 95.102 5.92741935483871 245 12 99 0 2 246 990099 989855 Treponema vincentii strain OMZ 861 chromosome, complete genome blastn 1470 387 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
2457476 2457476 PRJNA695273_P_NODE_153202_length_243_cov_0.905882_g152444_i0 PRJNA695273 153202 243 0.905882 2.20129326 Treponema 157 Bacteria Bacteria 337 5.399999999999998e-88   NTclustered gi|2034589463|gb|CP050497.1| 69710 g152444 i0 91.736 9.95884773662551 242 20 99 0 2 243 2532902 2532661 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 2420 337 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
10110921 10110921 PRJNA695273_P_NODE_151748_length_243_cov_1.476471_g150990_i0 PRJNA695273 151748 243 1.476471 3.58782453 Leptospira 171 Bacteria Bacteria 60.2 1.31e-4   NTclustered gi|167774246|gb|CP000777.1| 355278 g150990 i0 100 0.263374485596708 32 0 13 0 133 164 3289532 3289563 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I, complete sequence blastn 64 60.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira biflexa
11385667 11385667 PRJNA695273_P_NODE_140729_length_247_cov_0.885057_g139971_i0 PRJNA695273 140729 247 0.885057 2.18609079 Treponema 157 Bacteria Bacteria 446 8.759999999999998e-121   NTclustered gi|2265168914|gb|CP051304.1| 158 g139971 i0 99.19 20.7894736842105 247 2 100 0 1 247 1114812 1114566 Treponema denticola strain CD-1 chromosome, complete genome blastn 5135 446 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
13430600 13430600 PRJNA695273_P_NODE_127471_length_251_cov_0.865169_g126713_i0 PRJNA695273 127471 251 0.865169 2.17157419 Treponema denticola 158 Bacteria Bacteria 453 5.34e-123   NTclustered gi|2265172126|gb|CP051522.1| 158 g126713 i0 99.203 193.382470119522 251 2 100 0 1 251 514267 514017 Treponema denticola strain OMZ 910 chromosome, complete genome blastn 48539 453 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
19803404 19803404 PRJNA695273_P_NODE_115596_length_262_cov_1.328042_g114838_i0 PRJNA695273 115596 262 1.328042 3.47947004 Treponema socranskii 53419 Bacteria Bacteria 484 1.99e-132   NTclustered gi|1868715119|emb|LR796240.1| 69713 g114838 i0 100 3 262 0 100 0 1 262 820836 820575 Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 genome assembly, chromosome: contig00001 blastn 786 484 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii
24903469 24903469 PRJNA695273_P_NODE_144200_length_246_cov_0.890173_g143442_i0 PRJNA695273 144200 246 0.890173 2.18982558 Treponema denticola 158 Bacteria Bacteria 449 6.74e-122   NTclustered gi|2265168914|gb|CP051304.1| 158 g143442 i0 99.593 28.4024390243902 246 1 100 0 1 246 1823739 1823984 Treponema denticola strain CD-1 chromosome, complete genome blastn 6987 449 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;