RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7560844 7560844 PRJNA695273_P_NODE_53666_length_372_cov_1.545151_g52908_i0 PRJNA695273 53666 372 1.545151 5.74796172 root 1 Root_unresolved Root_unresolved 621 2.1499999999999998e-173   NTclustered gi|166046685|emb|CU367795.1| 100861 g52908 i0 96.774 98.4301075268817 372 12 100 0 1 372 115 486 Aphanomyces euteiches cDNA blastn 36616 627 0.990430622009569 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13935630 13935630 PRJNA695273_P_NODE_105111_length_274_cov_1.323383_g104353_i0 PRJNA695273 105111 274 1.323383 3.62606942 root 1 Root_unresolved Root_unresolved 451 2.12e-122   NTclustered gi|166046570|emb|CU367687.1| 100861 g104353 i0 96.35 20.0109489051095 274 10 100 0 1 274 530 257 Aphanomyces euteiches cDNA blastn 5483 451 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13937577 13937577 PRJNA695273_P_NODE_98951_length_281_cov_1.221154_g98193_i0 PRJNA695273 98951 281 1.221154 3.43144274 root 1 Root_unresolved Root_unresolved 514 2.75e-141   NTclustered gi|166046587|emb|CU367704.1| 100861 g98193 i0 99.644 99.6014234875445 281 1 100 0 1 281 236 516 Aphanomyces euteiches cDNA blastn 27988 514 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18531280 18531280 PRJNA695273_P_NODE_99755_length_280_cov_1.371981_g98997_i0 PRJNA695273 99755 280 1.371981 3.8415468 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 180 1.13e-40   NTclustered gi|698822200|ref|XM_009845827.1| 112090 g98997 i0 78.598 45.1285714285714 271 58 97 0 1 271 51 321 Aphanomyces astaci peptidyl-prolyl cis-trans isomerase 1 mRNA blastn 12636 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;