RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA695273 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5781726 5781726 PRJNA695273_P_NODE_47985_length_392_cov_0.965517_g47227_i0 PRJNA695273 47985 392 0.965517 3.78482664 Caenorhabditis elegans 6239 Nematoda Nematoda 472 2.43e-128   NTclustered gi|474805|emb|Z32683.1| 6239 g47227 i0 99.614 16.2040816326531 259 0 66 1 1 259 21034 20777 Caenorhabditis elegans Cosmid R07E5, complete sequence blastn 6352 472 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7056330 7056330 PRJNA695273_P_NODE_21246_length_606_cov_3.245779_g20496_i0 PRJNA695273 21246 606 3.245779 19.66942074 Caenorhabditis elegans 6239 Nematoda Nematoda 822 0   NTclustered gi|1429284|emb|Z75954.1| 6239 g20496 i0 100 11.1848184818482 445 0 73 0 162 606 2230 1786 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 6778 822 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13431779 13431779 PRJNA695273_P_NODE_3511_length_1653_cov_3.814557_g2076_i1 PRJNA695273 3511 1653 3.814557 63.05462721 Caenorhabditis elegans 6239 Nematoda Nematoda 1912 0   NTclustered gi|1429284|emb|Z75954.1| 6239 g2076 i1 99.524 36.805202661827 1051 4 64 1 1 1050 1786 736 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 60839 1912 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14705164 14705164 PRJNA695273_P_NODE_101192_length_278_cov_1.770732_g100434_i0 PRJNA695273 101192 278 1.770732 4.92263496 Caenorhabditis elegans 6239 Nematoda Nematoda 468 2.14e-127   NTclustered gi|1429284|emb|Z75954.1| 6239 g100434 i0 100 2.44604316546763 253 0 91 0 1 253 480 732 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 680 468 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15979466 15979466 PRJNA695273_P_NODE_127273_length_251_cov_0.865169_g126515_i0 PRJNA695273 127273 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 464 2.47e-126   NTclustered gi|373219291|emb|FO080793.1| 6239 g126515 i0 100 5 251 0 100 0 1 251 16869 16619 Caenorhabditis elegans Cosmid F55A3, complete sequence blastn 1255 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16484667 16484667 PRJNA695273_P_NODE_113293_length_264_cov_2.659686_g112535_i0 PRJNA695273 113293 264 2.659686 7.02157104 Metazoa 33208 Nematoda Nematoda 174 4.93e-39   NTclustered gi|76560692|gb|DQ145717.1| 52064 g112535 i0 92 46.6439393939394 125 8 47 2 12 135 593 716 Heterorhabditis marelatus 28S ribosomal RNA gene, partial sequence blastn 12314 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis marelatus
19804626 19804626 PRJNA695273_P_NODE_2436_length_2024_cov_3.201948_g2076_i0 PRJNA695273 2436 2024 3.201948 64.80742752 Caenorhabditis elegans 6239 Nematoda Nematoda 1912 0   NTclustered gi|1429284|emb|Z75954.1| 6239 g2076 i0 99.524 35.8917984189723 1051 4 52 1 975 2024 736 1786 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 72645 1912 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22355109 22355109 PRJNA695273_P_NODE_23018_length_580_cov_3.816568_g22266_i0 PRJNA695273 23018 580 3.816568 22.1360944 Caenorhabditis elegans 6239 Nematoda Nematoda 959 0   NTclustered gi|2226399|emb|Z75956.1| 6239 g22266 i0 100 4.55689655172414 519 0 89 0 1 519 19932 19414 Caenorhabditis elegans Cosmid R31, complete sequence blastn 2643 959 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;