RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3227476 3227476 PRJNA695273_P_NODE_114623_length_263_cov_1.494737_g113865_i0 PRJNA695273 114623 263 1.494737 3.93115831 Ctena cf. galapagana NHMUK 20210086 2892552 Mollusca Mollusca 134 8.34e-27   NTclustered gi|2129023951|gb|OL361786.1| 2892552 g113865 i0 90.909 8.55133079847909 99 9 38 0 4 102 4148 4050 Ctena cf. galapagana NHMUK 20210086 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2249 134 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Ctena Ctena cf. galapagana NHMUK 20210086
8330080 8330080 PRJNA695273_P_NODE_132667_length_249_cov_0.875000_g131909_i0 PRJNA695273 132667 249 0.875 2.17875 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g131909 i0 96.875 0.240963855421687 32 1 13 0 7 38 24602772 24602803 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 60 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
19804320 19804320 PRJNA695273_P_NODE_156016_length_242_cov_0.911243_g155258_i0 PRJNA695273 156016 242 0.911243 2.20520806 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g155258 i0 94.286 0.260330578512397 35 2 14 0 71 105 23025885 23025851 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 63 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24902938 24902938 PRJNA695273_P_NODE_121480_length_255_cov_1.373626_g120722_i0 PRJNA695273 121480 255 1.373626 3.5027463 Bradybaena similaris 145626 Mollusca Mollusca 58.4 4.98e-4   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g120722 i0 100 0.368627450980392 31 0 12 0 1 31 43171326 43171356 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 94 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;