RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1954738 1954738 PRJNA695273_P_NODE_70262_length_328_cov_2.415686_g69504_i0 PRJNA695273 70262 328 2.415686 7.92345008 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 579 1.1399999999999999e-160   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g69504 i0 98.476 16.5548780487805 328 5 100 0 1 328 3407 3734 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5430 579 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
9607520 9607520 PRJNA695273_P_NODE_85668_length_298_cov_2.288889_g84910_i0 PRJNA695273 85668 298 2.288889 6.82088922 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 459 1.4000000000000002e-124   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g84910 i0 94.649 3.00671140939597 299 11 100 5 1 298 4201 3907 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 896 459 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
23629362 23629362 PRJNA695273_P_NODE_11939_length_849_cov_1.405928_g11249_i0 PRJNA695273 11939 849 1.405928 11.93632872 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 1400 0   NTclustered gi|529154115|gb|EU266548.2| 500012 g11249 i0 96.037 73.4122497055359 858 19 100 10 1 849 854 1705 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 62327 1400 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
24903969 24903969 PRJNA695273_P_NODE_18560_length_656_cov_1.284734_g17811_i0 PRJNA695273 18560 656 1.284734 8.42785504 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 774 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g17811 i0 88.03 6.75609756097561 660 71 100 5 1 656 2751 2096 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4432 774 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;