RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1954985 1954985 PRJNA695273_P_NODE_81782_length_305_cov_3.198276_g81024_i0 PRJNA695273 81782 305 3.198276 9.7547418 Echinostelium minutum 300235 Evosea other_Eukaryota 189 2.08e-43   NTclustered gi|293601664|gb|AY643814.2| 300235 g81024 i0 80.228 79.6786885245902 263 42 85 8 1 258 1840 2097 Echinostelium minutum strain ATCC 22345 elongation factor 1A (EF1A) gene, partial cds blastn 24302 189 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium minutum
12158356 12158356 PRJNA695273_P_NODE_88390_length_293_cov_3.809091_g87632_i0 PRJNA695273 88390 293 3.809091 11.16063663 Cavenderia fasciculata 261658 Evosea other_Eukaryota 196 1.19e-45   NTclustered gi|470238151|ref|XM_004350982.1| 261658 g87632 i0 78.767 83.457337883959 292 62 99 0 1 292 400 109 Cavenderia fasciculata Ras GTPase (rapA), partial mRNA blastn 24453 196 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20309618 20309618 PRJNA695273_P_NODE_74056_length_321_cov_0.931452_g73298_i0 PRJNA695273 74056 321 0.931452 2.98996092 Protostelium 472930 Evosea other_Eukaryota 588 1.8599999999999994e-163   NTclustered gi|262262921|gb|FJ766464.1| 472931 g73298 i0 99.689 45.3769470404984 322 0 100 1 1 321 1503 1182 Protostelium mycophagum strain KA-T15-2 small subunit ribosomal RNA gene, partial sequence blastn 14566 588 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
23629461 23629461 PRJNA695273_P_NODE_123519_length_252_cov_2.055866_g122761_i0 PRJNA695273 123519 252 2.055866 5.18078232 Acytostelium subglobosum 361139 Evosea other_Eukaryota 196 9.98e-46   NTclustered gi|831753332|ref|XM_012892328.1| 1410327 g122761 i0 81.377 1.9484126984127 247 41 98 4 7 252 531 289 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 491 196 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;