RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA695273 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1182583 1182583 PRJNA695273_P_NODE_26681_length_532_cov_5.117647_g25927_i0 PRJNA695273 26681 532 5.117647 27.22588204 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 342 2.7699999999999998e-89   NTclustered gi|822093018|gb|KP313331.1| 5911 g25927 i0 79.832 58.281954887218 476 90 89 6 59 531 569 97 Tetrahymena thermophila isolate 19224-1 translation elongation factor 1 subunit alpha (TEF1a) gene, partial cds; macronuclear blastn 31006 342 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
4504924 4504924 PRJNA695273_P_NODE_129404_length_250_cov_0.870056_g128646_i0 PRJNA695273 129404 250 0.870056 2.17514 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 412 9.02e-111   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g128646 i0 96.4 27.784 250 9 100 0 1 250 609 360 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 6946 412 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
4505372 4505372 PRJNA695273_P_NODE_148144_length_244_cov_1.801170_g147386_i0 PRJNA695273 148144 244 1.80117 4.3948548 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 431 2.419999999999999e-116   NTclustered gi|759083473|gb|KM222090.1| 1607889 g147386 i0 99.576 91.1926229508197 236 1 97 0 1 236 261 496 Opisthonecta sp. FG-2015 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22251 431 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
8332524 8332524 PRJNA695273_P_NODE_9727_length_954_cov_6.875142_g9073_i0 PRJNA695273 9727 954 6.875142 65.58885468 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 281 1.13e-70   NTclustered gi|114329857|ref|NC_008338.1| 5905 g9073 i0 76.101 5.94129979035639 636 97 66 41 4 629 3228 2638 Tetrahymena paravorax mitochondrion, complete genome blastn 5668 281 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
8835964 8835964 PRJNA695273_P_NODE_5747_length_1280_cov_3.369511_g5220_i0 PRJNA695273 5747 1280 3.369511 43.1297408 Pseudocohnilembidae 35102 SAR_Eukaryotes SAR_Eukaryotes 754 0   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g5220 i0 80.224 61.8453125 1072 156 83 36 11 1069 6399 5371 Cryptocaryon irritans mitochondrion, complete genome blastn 79162 754 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
8836308 8836308 PRJNA695273_P_NODE_79127_length_310_cov_8.818565_g78369_i0 PRJNA695273 79127 310 8.818565 27.3375515 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 224 5.8e-54   NTclustered gi|1802599794|gb|MT001203.1| 41631 g78369 i0 100 83.5354838709677 121 0 82 0 190 310 1543 1423 Colpoda sp. strain HFCC848 small subunit ribosomal RNA gene, partial sequence blastn 25896 224 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
10882399 10882399 PRJNA695273_P_NODE_5209_length_1351_cov_5.304382_g4707_i0 PRJNA695273 5209 1351 5.304382 71.66220082 Colpoda steini 63136 SAR_Eukaryotes SAR_Eukaryotes 1707 0   NTclustered gi|2166921685|gb|OL894853.1| 63136 g4707 i0 96.878 56.5107327905255 1025 23 76 8 292 1314 4 1021 Colpoda steini clone MITTA small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 76346 1707 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
15211642 15211642 PRJNA695273_P_NODE_57732_length_359_cov_5.695804_g56974_i0 PRJNA695273 57732 359 5.695804 20.44793636 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 307 6.570000000000001e-79   NTclustered gi|2209090|gb|AF003089.1|AF003089 5919 g56974 i0 83.041 187.757660167131 342 54 95 4 1 340 448 109 Tetrahymena vorax ubiquitin mRNA, complete cds blastn 67405 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena vorax
16485052 16485052 PRJNA695273_P_NODE_144593_length_245_cov_4.017442_g143835_i0 PRJNA695273 144593 245 4.017442 9.8427329 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 442 1.1199999999999994e-119   NTclustered gi|2651357791|gb|PP174306.1| 41631 g143835 i0 99.184 99.7510204081633 245 2 100 0 1 245 2691 2935 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24439 442 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
18529074 18529074 PRJNA695273_P_NODE_143595_length_246_cov_0.890173_g142837_i0 PRJNA695273 143595 246 0.890173 2.18982558 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 300 7.19e-77   NTclustered gi|21215210|gb|AF510207.1| 94289 g142837 i0 88.618 99.6056910569106 246 28 100 0 1 246 1326 1081 Sterkiella histriomuscorum beta-tubulin gene, complete cds blastn 24503 300 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
23630022 23630022 PRJNA695273_P_NODE_146659_length_245_cov_0.895349_g145901_i0 PRJNA695273 146659 245 0.895349 2.19360505 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 150 7.62e-32   NTclustered gi|17432159|emb|AJ251471.1| 5908 g145901 i0 85.034 0.840816326530612 147 22 60 0 3 149 16 162 Tetrahymena pyriformis partial vppa gene for putative proton-translocating inorganic pyrophosphatase, isoform II blastn 206 150 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
25408524 25408524 PRJNA695273_P_NODE_131620_length_249_cov_1.312500_g130862_i0 PRJNA695273 131620 249 1.3125 3.268125 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 392 1.1699999999999999e-104   NTclustered gi|358350430|dbj|AB684403.1| 63136 g130862 i0 96.667 68.3895582329317 240 1 95 4 14 249 264 28 Colpoda steinii genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence blastn 17029 394 0.99492385786802 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;