RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA695273" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA695273 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2458167 2458167 PRJNA695273_P_NODE_51662_length_378_cov_7.668852_g50904_i0 PRJNA695273 51662 378 7.668852 28.98826056 Eukaryota 2759 Plants Plants 699 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g50904 i0 100 99.7619047619048 378 0 100 0 1 378 496 873 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 37710 699 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
5780699 5780699 PRJNA695273_P_NODE_144345_length_246_cov_0.890173_g143587_i0 PRJNA695273 144345 246 0.890173 2.18982558 Chlamydomonas reinhardtii 3055 Plants Plants 60.2 1.33e-4   NTclustered gi|2082236579|ref|XM_043058545.1| 3055 g143587 i0 97.143 9.03658536585366 35 1 14 0 198 232 4941 4907 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g025551v5), mRNA blastn 2223 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7559807 7559807 PRJNA695273_P_NODE_123406_length_252_cov_11.810056_g122648_i0 PRJNA695273 123406 252 11.810056 29.76134112 Eukaryota 2759 Plants Plants 466 6.89e-127   NTclustered gi|1201359270|gb|MF040792.1| 3078 g122648 i0 100 99.9960317460317 252 0 100 0 1 252 109 360 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 25199 466 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
12158199 12158199 PRJNA695273_P_NODE_81590_length_306_cov_1.313305_g80832_i0 PRJNA695273 81590 306 1.313305 4.0187133 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.029   NTclustered gi|2082270981|ref|XM_043072608.1| 3055 g80832 i0 100 0.0915032679738562 28 0 9 0 264 291 4753 4780 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g739050v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13936327 13936327 PRJNA695273_P_NODE_163231_length_218_cov_6.572414_g162473_i0 PRJNA695273 163231 218 6.572414 14.32786252 Eukaryota 2759 Plants Plants 403 4.62e-108   NTclustered gi|1898545223|gb|MT951391.1| 3078 g162473 i0 100 99.9678899082569 218 0 100 0 1 218 1397 1614 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 21793 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
14708190 14708190 PRJNA695273_P_NODE_89492_length_292_cov_1.041096_g88734_i0 PRJNA695273 89492 292 1.041096 3.04000032 Auxenochlorella protothecoides 3075 Plants Plants 130 1.22e-25   NTclustered gi|760445578|ref|XM_011401556.1| 3075 g88734 i0 88.679 2.83904109589041 106 12 36 0 153 258 105 210 Auxenochlorella protothecoides 40S ribosomal protein S11 partial mRNA blastn 829 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;