contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA695140" and tax_phylum = "Actinomycetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1952043 | 1952043 | PRJNA695140_S_NODE_1442_length_445_cov_5.132353_g1263_i0 | PRJNA695140 | 1442 | 445 | 5.132353 | 22.83897085 | Pseudonocardia dioxanivorans | 240495 | Bacteria | Bacteria | 505 | 2.749999999999999e-138 | NTclustered | gi|326948588|gb|CP002593.1| | 675635 | g1263 | i0 | 91.076 | 315.624719101124 | 381 | 22 | 84 | 11 | 1 | 375 | 4087467 | 4087841 | Pseudonocardia dioxanivorans CB1190, complete genome | blastn | 140453 | 505 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia dioxanivorans | ||
| 1952081 | 1952081 | PRJNA695140_S_NODE_5162_length_231_cov_2.860825_g4981_i0 | PRJNA695140 | 5162 | 231 | 2.860825 | 6.60850575 | Pseudonocardia petroleophila | 37331 | Bacteria | Bacteria | 315 | 2.38e-81 | NTclustered | gi|1893041651|gb|CP060131.1| | 37331 | g4981 | i0 | 91.703 | 290.458874458874 | 229 | 15 | 97 | 2 | 7 | 231 | 2311 | 2083 | Pseudonocardia petroleophila strain CGMCC 4.1532 chromosome, complete genome | blastn | 67096 | 315 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia petroleophila | ||
| 2456815 | 2456815 | PRJNA695140_S_NODE_7682_length_190_cov_3.686275_g7501_i0 | PRJNA695140 | 7682 | 190 | 3.686275 | 7.0039225 | Pseudonocardia | 1847 | Bacteria | Bacteria | 296 | 6.83e-76 | NTclustered | gi|470488300|ref|NR_076861.1| | 240495 | g7501 | i0 | 95.213 | 303.163157894737 | 188 | 8 | 98 | 1 | 4 | 190 | 1602 | 1415 | Pseudonocardia dioxanivorans strain CB1190 23S ribosomal RNA gene, complete sequence | blastn | 57601 | 296 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia dioxanivorans | ||
| 4504166 | 4504166 | PRJNA695140_S_NODE_6004_length_214_cov_4.169492_g5823_i0 | PRJNA695140 | 6004 | 214 | 4.169492 | 8.92271288 | Pseudonocardia sp. DSM 110487 | 2865833 | Bacteria | Bacteria | 385 | 1.64e-102 | NTclustered | gi|2077468618|gb|CP080521.1| | 2865833 | g5823 | i0 | 99.065 | 279.766355140187 | 214 | 2 | 100 | 0 | 1 | 214 | 1891639 | 1891852 | Pseudonocardia sp. DSM 110487 chromosome, complete genome | blastn | 59870 | 385 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia sp. DSM 110487 | ||
| 12660943 | 12660943 | PRJNA695140_S_NODE_3570_length_276_cov_5.054393_g3389_i0 | PRJNA695140 | 3570 | 276 | 5.054393 | 13.95012468 | Pseudonocardia | 1847 | Bacteria | Bacteria | 394 | 3.66e-105 | NTclustered | gi|470488300|ref|NR_076861.1| | 240495 | g3389 | i0 | 98.222 | 232.11231884058 | 225 | 4 | 82 | 0 | 1 | 225 | 1327 | 1551 | Pseudonocardia dioxanivorans strain CB1190 23S ribosomal RNA gene, complete sequence | blastn | 64063 | 394 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia dioxanivorans | ||
| 12660993 | 12660993 | PRJNA695140_S_NODE_9450_length_173_cov_1.117647_g9269_i0 | PRJNA695140 | 9450 | 173 | 1.117647 | 1.93352931 | Nocardiaceae | 85025 | Bacteria | Bacteria | 320 | 3.61e-83 | NTclustered | gi|2637134465|gb|CP140264.1| | 1828 | g9269 | i0 | 100 | 359.346820809249 | 173 | 0 | 100 | 0 | 1 | 173 | 1621602 | 1621430 | Rhodococcoides fascians strain GS01 chromosome, complete genome | blastn | 62167 | 320 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcoides | Rhodococcoides fascians | ||
| 16484391 | 16484391 | PRJNA695140_S_NODE_10553_length_165_cov_0.898438_g10372_i0 | PRJNA695140 | 10553 | 165 | 0.898438 | 1.4824227 | Cutibacterium | 1912216 | Bacteria | Bacteria | 305 | 9.59e-79 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g10372 | i0 | 100 | 252.842424242424 | 165 | 0 | 100 | 0 | 1 | 165 | 57027 | 57191 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 41719 | 305 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 19033357 | 19033357 | PRJNA695140_S_NODE_7255_length_195_cov_7.183544_g7074_i0 | PRJNA695140 | 7255 | 195 | 7.183544 | 14.0079108 | Pseudonocardiaceae | 2070 | Bacteria | Bacteria | 289 | 1.1799999999999998e-73 | NTclustered | gi|2174763227|gb|CP090063.1| | 715473 | g7074 | i0 | 94.652 | 271.876923076923 | 187 | 8 | 95 | 2 | 1 | 186 | 818560 | 818375 | Amycolatopsis acidiphila strain KCTC 39523 chromosome, complete genome | blastn | 53016 | 291 | 0.993127147766323 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Amycolatopsis | Amycolatopsis acidiphila | ||
| 25408040 | 25408040 | PRJNA695140_S_NODE_2320_length_343_cov_4.905229_g2139_i0 | PRJNA695140 | 2320 | 343 | 4.905229 | 16.82493547 | Pseudonocardia | 1847 | Bacteria | Bacteria | 551 | 2.619999999999999e-152 | NTclustered | gi|470488300|ref|NR_076861.1| | 240495 | g2139 | i0 | 95.627 | 249.201166180758 | 343 | 15 | 100 | 0 | 1 | 343 | 1153 | 811 | Pseudonocardia dioxanivorans strain CB1190 23S ribosomal RNA gene, complete sequence | blastn | 85476 | 556 | 0.991007194244604 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia dioxanivorans | ||
| 25408071 | 25408071 | PRJNA695140_S_NODE_5740_length_219_cov_4.384615_g5559_i0 | PRJNA695140 | 5740 | 219 | 4.384615 | 9.60230685 | Pseudonocardia | 1847 | Bacteria | Bacteria | 361 | 2.83e-95 | NTclustered | gi|1464106963|dbj|AP018920.1| | 2074 | g5559 | i0 | 96.347 | 361.680365296804 | 219 | 8 | 100 | 0 | 1 | 219 | 646288 | 646506 | Pseudonocardia autotrophica NBRC 12743 DNA, complete genome | blastn | 79208 | 363 | 0.994490358126722 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardia | Pseudonocardia autotrophica |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;